View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15047_high_6 (Length: 304)
Name: NF15047_high_6
Description: NF15047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15047_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 52964369 - 52964090
Alignment:
| Q |
1 |
atattttgggcaccatattgttgccaatttataataaaacagagatggatcgtgaatggttggaatccttaacttttgacacgtgttcaaatatgattga |
100 |
Q |
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| T |
52964369 |
atattttgggcaccatattgttgccaatttataataaaacagagatggatcgtgaatggttggaatccttaacttttgacacgtgttcaaatatgattga |
52964270 |
T |
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| Q |
101 |
gtgattaattccctgaaatattgttatcaaacagatgcacattgaccccacgtgctatgaaccttttcccatgctgctccttatccaaaatcgttcttct |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52964269 |
gtgattaattccctgaaatattgttagcaaacagatacacattgaccccacgtgctatgaactttttcccatgctgctccttatccaaaatcgttcttct |
52964170 |
T |
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| Q |
201 |
tgtttggaatcaaatcaaaccaaagttgacttatttgctcggcttatttgatccaatggaatcaaataatttcattttggacatcggatt |
290 |
Q |
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| T |
52964169 |
tgtttggaatcaaatcaaaccaaagttgacttatttgctcggcttatttg----------atcaaataatttcattttggacatcggatt |
52964090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 52969351 - 52969252
Alignment:
| Q |
138 |
cacattgaccccacgtg-ctatgaaccttttcccatgctgctc--cttatccaaaatcgttcttcttgtttggaatcaaatcaaaccaaagttgacttat |
234 |
Q |
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||||||||||||||||| || ||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52969351 |
cacattgaccccacgtggctttgaactttttcccatgctgctctccttatccaaaatggttcctcttgtttggaatcaaatcaaaccaaagttgacttat |
52969252 |
T |
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