View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15047_low_1 (Length: 486)
Name: NF15047_low_1
Description: NF15047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15047_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 32 - 482
Target Start/End: Original strand, 49665359 - 49665809
Alignment:
| Q |
32 |
agagtgtccaggttcatttagttgcggatatcttggcaatatcagctttcctttcactacaacagaacgccaggactgtggcttattgccaatacctaac |
131 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49665359 |
agagtgtccaccttcatttagttgtggatatcttggcaatatcagcttccctttcactacaacagaacgccaggactgtggcttattgccaatacctaac |
49665458 |
T |
|
| Q |
132 |
tgtgatggtgatccaatgaagcccaaaatgatcaaatatcagaataaagggaaatggtttgagtttgaagttcaaggtgtaactcctcttgattttcaca |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||| |||| ||| || |||| |
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| T |
49665459 |
tgtgatggtgatccaatgaagcccaaaatgatcaaatatcataataaagggaaatggtttgagtttgaggttgcagctgtatatccttctgagttgcaca |
49665558 |
T |
|
| Q |
232 |
gtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactcctcc |
331 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49665559 |
gtggcagtactacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactcctcc |
49665658 |
T |
|
| Q |
332 |
tcccacctatcactttgtttcttttcgtatcgttcccaacacaacgccgttcttgtgcaaccgtacccaccatatcaaccctccaacatataggcataac |
431 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||| | |||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
49665659 |
tcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgcataac |
49665758 |
T |
|
| Q |
432 |
tatacgtgtccgcattatgatctcgactgccagcctcatagccatgatgat |
482 |
Q |
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|||||||||||||| ||||||||| ||| ||||||||||||||||| |||| |
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| T |
49665759 |
tatacgtgtccgcactatgatctctactaccagcctcatagccatgctgat |
49665809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 32 - 482
Target Start/End: Original strand, 49708916 - 49709366
Alignment:
| Q |
32 |
agagtgtccaggttcatttagttgcggatatcttggcaatatcagctttcctttcactacaacagaacgccaggactgtggcttattgccaatacctaac |
131 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49708916 |
agagtgtccaccttcatttagttgtggatatcttggcaatatcagcttccctttcactacaacagaacgccaggactgtggcttattgccaatacctaac |
49709015 |
T |
|
| Q |
132 |
tgtgatggtgatccaatgaagcccaaaatgatcaaatatcagaataaagggaaatggtttgagtttgaagttcaaggtgtaactcctcttgattttcaca |
231 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||| |||| ||| || |||| |
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| T |
49709016 |
tgtgatggtgatccaatgaagcccaaaatgatcaaatatcataataaagggaaatggtttgagtttgaggttgcagctgtatatccttctgagttgcaca |
49709115 |
T |
|
| Q |
232 |
gtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactcctcc |
331 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49709116 |
gtggcagtactacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactcctcc |
49709215 |
T |
|
| Q |
332 |
tcccacctatcactttgtttcttttcgtatcgttcccaacacaacgccgttcttgtgcaaccgtacccaccatatcaaccctccaacatataggcataac |
431 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||| | |||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
49709216 |
tcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgcataac |
49709315 |
T |
|
| Q |
432 |
tatacgtgtccgcattatgatctcgactgccagcctcatagccatgatgat |
482 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||||||||||| |||| |
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|
| T |
49709316 |
tatacgtgtccgcactatgatctctactaccagcctcatagccatgctgat |
49709366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 49210044 - 49210381
Alignment:
| Q |
20 |
taagtaccagggagagtgtccaggttcatttagttgcggatatcttggcaatatcagctttcctttcactacaacagaacgccaggactgtggcttattg |
119 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
49210044 |
taagtaccaaggagaatgtccaggttcatttagttgtggatatcttggcaatatcagctttcctttcactaccacagaacgccaggactgtggcttattg |
49210143 |
T |
|
| Q |
120 |
ccaatacctaactgtgatggtgatccaatgaagcccaaaatgatcaaatatcagaataaagggaaatggtttgagtttgaagttcaaggtgtaactcctc |
219 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |
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| T |
49210144 |
ccaatacctgactgtgatggtgatccaatgaagcacaaaacgatcaaatatcagaataaagggaaatggtttgagtttgtggttgcatctgtatatcctc |
49210243 |
T |
|
| Q |
220 |
ttgattttcacagtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataa |
319 |
Q |
| |
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|| || |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49210244 |
ctgggttgcacagtggtagtaatacttctacttgtgtttttagagacattaatctctacaaaatgctgcaaaacaaaagttgtgaagctttcagatatag |
49210343 |
T |
|
| Q |
320 |
ttatactcctcctcccacctatcactttgtttcttttc |
357 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
49210344 |
ttatactcttcctcccacctctcactttgtttcttttc |
49210381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 78 - 357
Target Start/End: Complemental strand, 41686530 - 41686248
Alignment:
| Q |
78 |
tttcctttcactacaacagaacgccaggactgtggcttattgccaatacctaactgtgatggtgatccaatgaagccc---aaaatgatcaaatatcaga |
174 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| ||||| |
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| T |
41686530 |
tttcctttcactactacagaacttcaggattgtgatttattgccaatacctaactgtgatggtgatccattgaagcccaaaaaaatgatctaatttcaga |
41686431 |
T |
|
| Q |
175 |
ataaagggaaatggtttgagtttgaagttcaaggtgtaactcctcttgattttcacagtggtagtgatacttctacttgtgttttcagagacaataatct |
274 |
Q |
| |
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| ||||| ||||||||||||||||| || | ||||| ||||| ||| | ||||||||||| || |||| ||| ||||||||| |||||||||||||| |
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| T |
41686430 |
acaaaggaaaatggtttgagtttgagctttagattgtaagtcctcctgagtatcacagtggtaatgctactcctaattgtgtttttagagacaataatct |
41686331 |
T |
|
| Q |
275 |
ctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactcctcctcccacctatcactttgtttcttttc |
357 |
Q |
| |
|
|||||||||| | || || || ||||||| ||||||||||||| ||||||| ||| ||||||| ||||||||||||||||| |
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|
| T |
41686330 |
ctacaaactgttttaatccagaaattgtgaaactttcagatataactatactcttccccccacctctcactttgtttcttttc |
41686248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 71 - 265
Target Start/End: Original strand, 18317352 - 18317549
Alignment:
| Q |
71 |
tatcagctttcctttcactacaacagaacgccaggactgtggcttattgccaatacctaactgtgatggtgatccaatgaagccc---aaaatgatcaaa |
167 |
Q |
| |
|
|||||||||||||||||| || ||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |
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|
| T |
18317352 |
tatcagctttcctttcaccaccacagaactccaggattgtgacttattgccaatacctaactgtgatggtgatccattgaagcccaaaaaaatgatctaa |
18317451 |
T |
|
| Q |
168 |
tatcagaataaagggaaatggtttgagtttgaagttcaaggtgtaactcctcttgattttcacagtggtagtgatacttctacttgtgttttcagaga |
265 |
Q |
| |
|
| |||||| ||||| ||||||||||||||||| || | ||||| ||||| ||| | ||||||||||| || |||||||| ||||||||| ||||| |
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|
| T |
18317452 |
tttcagaacaaaggaaaatggtttgagtttgagctttagattgtaagtcctcctgagtatcacagtggtaatgctacttctaattgtgtttttagaga |
18317549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 18317550 - 18317607
Alignment:
| Q |
299 |
ttgtgaagctttcagatataattatactcctcctcccacctatcactttgtttcttttc |
357 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||| ||||||| ||||||||||||||||| |
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|
| T |
18317550 |
ttgtgaagctttcaaatataactatactcttcc-cccacctctcactttgtttcttttc |
18317607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 436
Target Start/End: Complemental strand, 41686243 - 41686187
Alignment:
| Q |
380 |
gttcttgtgcaaccgtacccaccatatcaaccctccaacatataggcataactatac |
436 |
Q |
| |
|
|||| ||||||||||||| | ||||||||| | ||||||||||| |||||| ||||| |
|
|
| T |
41686243 |
gttcatgtgcaaccgtactctccatatcaaacgtccaacatatatgcataattatac |
41686187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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