View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15047_low_2 (Length: 416)
Name: NF15047_low_2
Description: NF15047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15047_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 3130507 - 3130762
Alignment:
| Q |
17 |
aacaacctcattactataagtattttgtttcggtcattgtttctaaactataaggatacattgtgctgcacatctttaacattccatctttggagcatga |
116 |
Q |
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| T |
3130507 |
aacaacctcattactataagtattttgtttcggtcattgtttctaaactataaggatagattgtgctgcacatctttaacattccatctttggagcatga |
3130606 |
T |
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| Q |
117 |
ttcccaaagccttggtaagctcctgccgcaagcttgttatttgagaaagatgatgaagaaatgggatctgaagctatagttaatgatggacctgcaattt |
216 |
Q |
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| T |
3130607 |
ttcccaaagccttggtaagctcctgctgcaagcttgttatttgagaaagatgatgaagaaatgggatctgaagctatagttaatgatggacctgcaattt |
3130706 |
T |
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| Q |
217 |
atttttatatcacctattggtcttaattctacaatggttcaagttccacttgtcct |
272 |
Q |
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| T |
3130707 |
atttttatatcacctattggtcttaattctacaatggttcaagttccacttgtcct |
3130762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 8307184 - 8307083
Alignment:
| Q |
169 |
atgaagaaatgggatctgaagctatagttaatgatggacctgcaatttatttttatatcacctattggtcttaattctacaatggttcaagttccacttg |
268 |
Q |
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| T |
8307184 |
atgaagaaatgggatctgaagctatagttaatgatggacctgcaatttatttttatatcacctattggtcttaattgtacaatggttcaagttgcacttg |
8307085 |
T |
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| Q |
269 |
tc |
270 |
Q |
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| T |
8307084 |
tc |
8307083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 3130786 - 3130867
Alignment:
| Q |
269 |
tcctagtgttgtttattgaaatacatgtttccttttcaatctggagcaagcttttggagctaggagctacacagtatgactca |
351 |
Q |
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| T |
3130786 |
tcctagtgttgtttattgaaatacttgtttccttttcaatctggagcaagc-tttggagctaggagctacacagtctgactca |
3130867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 8307000 - 8306918
Alignment:
| Q |
83 |
tgcacatctttaacattccatctttggagcatgattcccaaagccttggtaagctcctgccgcaagcttgttatttgagaaagatga |
169 |
Q |
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| T |
8307000 |
tgcaaatctttaacattccatctttgg----tgattcccaaagctttggtaagctcctgcttccagcttgttatttgtgaatgatga |
8306918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 8307312 - 8307251
Alignment:
| Q |
108 |
ggagcatgattcccaaagccttggtaagctcctgccgcaagcttgttatttgagaaagatga |
169 |
Q |
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| T |
8307312 |
ggagcatgattcccaaagtcttggtaagctcctgctaccagcttgttatttgtgaatgatga |
8307251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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