View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_high_1 (Length: 637)
Name: NF15048_high_1
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Complemental strand, 8757435 - 8756807
Alignment:
| Q |
1 |
acacaacaacgcccttgattctgtaatgcttcgacaaattgccacattacctttagccaaatgccatagagctcttgctgccatttccttcatacttgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8757435 |
acacaacaacgcccttgattctgtaatgcttcgacaaattgccacattacctttagccaaatgccatagagctcttgctgccatttccttcatacttgcc |
8757336 |
T |
|
| Q |
101 |
ttagtctcagcatcttcagattcccttcccttcatgttaatccccgaatgcgaataatttctctgatgattattatgatttccttgcttcccaccatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8757335 |
ttagtctcagcatcttcagattcccttcccttcatgttaatccccgaatgcgaataatttctctgatgattattatgatttccttgcttcccaccatcat |
8757236 |
T |
|
| Q |
201 |
taccattaccattacca------agtccattaccattaggagtattggaattggccaaaatgttctgattttgatttgcttcatttccttcattgggctg |
294 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8757235 |
taccattaccattaccattaccgagtccattaccattaggagtattggaattggccaaaatgttctgattttgatttgcttcatttccttcattgggctg |
8757136 |
T |
|
| Q |
295 |
cttggaagcagcatgaattgccatagtacttgtgatcactctatgcagatttcttggtctttcacctaatggatgatgcgatacacgaccatgtttattg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8757135 |
cttggaagcagcatgaattgccatagtacttgtgatcactctatgcagatttcttggtctttcacctaatggatgatgtgatacacgaccatgtttattg |
8757036 |
T |
|
| Q |
395 |
ccaccaccaacaacaacaccatcttcattttcagttcccttcttgggattaagattagagttagaattattattattactagccataacaacagcggcgt |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8757035 |
ccaccaccaacaacaacaccatcttcattttcagttcccttcttgggattaagattagagctagaattattattattactagccataacaacagcggcgt |
8756936 |
T |
|
| Q |
495 |
gaatcgaattcgctttcatactaacaatagcatacttactatgttcctcaacagtttcaaaagctaaatgaccaacaagcaacctaataatattatgctg |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8756935 |
gaatcgaattcgctttcatactaacaatagcatacttactatgttcctcaacagtttcaaaagctaaatgaccaacaagcaacctaataatattatgctg |
8756836 |
T |
|
| Q |
595 |
agcaaaaagttcctgacatttagaataat |
623 |
Q |
| |
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||||||||||||||||||||||| ||||| |
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| T |
8756835 |
agcaaaaagttcctgacatttaggataat |
8756807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 513 - 617
Target Start/End: Original strand, 32031485 - 32031589
Alignment:
| Q |
513 |
tactaacaatagcatacttactatgttcctcaacagtttcaaaagctaaatgaccaacaagcaacctaataatattatgctgagcaaaaagttcctgaca |
612 |
Q |
| |
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|||||||||| ||||| ||||||||||| | ||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||| || ||||| |
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| T |
32031485 |
tactaacaattgcatatttactatgttcttgaacagtttcaaaagcaatgtgactcacaagcaacctaacaatattatgctgagcaaaaacatcttgaca |
32031584 |
T |
|
| Q |
613 |
tttag |
617 |
Q |
| |
|
||||| |
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|
| T |
32031585 |
tttag |
32031589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 615
Target Start/End: Original strand, 28036238 - 28036333
Alignment:
| Q |
520 |
aatagcatacttactatgttcctcaacagtttcaaaagctaaatgaccaacaagcaacctaataatattatgctgagcaaaaagttcctgacattt |
615 |
Q |
| |
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||||| ||||||||||||||| | || ||||||||||| | ||||| ||||||||| | |||| ||||| |||||||||| | || |||||||| |
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| T |
28036238 |
aatagaatacttactatgttcttgaatggtttcaaaagcaagatgactaacaagcaaacgaatagcattattctgagcaaaatgatcttgacattt |
28036333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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