View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_high_10 (Length: 341)
Name: NF15048_high_10
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_high_10 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 1304160 - 1304081
Alignment:
| Q |
242 |
actgagaataaaaagtgaaa-atactcatatattttttagtatgttttgatttattttactatgctttgttgcatataag |
320 |
Q |
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| T |
1304160 |
actgagaataaaaagtgaaatatactcatttattttttagtatgttttgatttattttactatgctttgttgcatataag |
1304081 |
T |
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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 1304292 - 1304217
Alignment:
| Q |
68 |
tcttgcattctttttccccaccactcttcaattattttatttattagtgttttatcctactatataatatccatct |
143 |
Q |
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| T |
1304292 |
tcttgcattctttttccccaccactcttcaattattttctttattagtgttttatcctactatataatatctatct |
1304217 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 21970930 - 21970880
Alignment:
| Q |
247 |
gaataaaaagtgaaaatactcatatattttttagtatgttttgatttattt |
297 |
Q |
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| T |
21970930 |
gaataaagagtaaaaatactcatttattttttagtatgttttgatttattt |
21970880 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 17258725 - 17258649
Alignment:
| Q |
246 |
agaataaaaagtgaaa-atactcatatattttttagtatgttttga-tttattttactatgctttgttgcatataag |
320 |
Q |
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| T |
17258725 |
agaataaagagtgaaagatactcatttattttttagtatgtttagattttattatattatgctttgtggcatataag |
17258649 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 13340234 - 13340158
Alignment:
| Q |
246 |
agaataaaaagtgaaaa-tactcatatattttttagtatgttttga-tttattttactatgctttgttgcatataag |
320 |
Q |
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||||||||||||||||| ||||||| ||||| |||||||||||| | |||||||||||||| ||||| || |||||| |
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| T |
13340234 |
agaataaaaagtgaaaagtactcatttatttgttagtatgttttaattttattttactatgttttgtggcgtataag |
13340158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 19255091 - 19255034
Alignment:
| Q |
263 |
tactcatatatttt-ttagtatgttttgatttattttactatgctttgttgcatataa |
319 |
Q |
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| T |
19255091 |
tactcatttattttcttagtatgttttgattttatttactatgctatgtggcatataa |
19255034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 13177333 - 13177257
Alignment:
| Q |
246 |
agaataaaaagtgaaaa-tactcatatattttttagtatgttttga-tttattttactatgctttgttgcatataag |
320 |
Q |
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||||||||||||||||| ||||||| ||||| ||||||||||| | |||||||| ||||| ||||| || |||||| |
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| T |
13177333 |
agaataaaaagtgaaaagtactcatttatttaatagtatgttttaattttatttttctatgttttgtggcttataag |
13177257 |
T |
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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 129655 - 129731
Alignment:
| Q |
246 |
agaataaaaagtgaaaa-tactcatatattttttagtatgttttga-tttattttactatgctttgttgcatataag |
320 |
Q |
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||||||||||||||||| ||||||| ||||| ||||||||||| | |||||||| ||||| ||||| || |||||| |
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| T |
129655 |
agaataaaaagtgaaaagtactcatttatttaatagtatgttttaattttatttttctatgttttgtggcttataag |
129731 |
T |
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