View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_high_16 (Length: 253)
Name: NF15048_high_16
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_high_16 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 36313348 - 36313110
Alignment:
| Q |
15 |
atgaaaggacacaagctcactgaacttggtgtgctcgccattattgataaatgccctcttcttgaatctcttgacattcgtgattgtcattatttgaatg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36313348 |
atgaaaggacacaagctcactgaacttggtgtgctcgccattattgataaatgccctcttcttgagtctcttgacattcgtgattgtcattatttgaatg |
36313249 |
T |
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| Q |
115 |
aaagtttggagaaaagctgcattgatcagattaatgatttgcgcatgccagttcgttataaccatgaagacaattattataatgatcgtgcttctttttg |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
36313248 |
aaggtttggagaaaagctgcattgatcagattaatgatttgcacatgccagttcgttataaccatgaaaacaactattataatgatcgtgcttctttttg |
36313149 |
T |
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| Q |
215 |
gggcaatatgatatctgttctgatgatgataatgatgat |
253 |
Q |
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| T |
36313148 |
gggcaatattatatctgttctgatgatgatgatgatgat |
36313110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 36333415 - 36333266
Alignment:
| Q |
15 |
atgaaaggacacaagctcactgaacttggtgtgctcgccattattgataaatgccctcttcttgaatctcttgacattcgtgattgtcattatttgaatg |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36333415 |
atgaaaggacacaagctcactcaacttggtgtgctcgccattattgataaaggccctcttcttgagtctcttgacattcgtgattgtcattatttgaatg |
36333316 |
T |
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| Q |
115 |
aaagtttggag-aaaagctgcattgatcagattaatgatttgcgcatgcc |
163 |
Q |
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| T |
36333315 |
aagatttggagaaaaaggtgcattgatcaaatcaatgatatgcgaatgcc |
36333266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 36327589 - 36327418
Alignment:
| Q |
16 |
tgaaaggacacaagctcactgaacttggtgtgctcgccattattgataaatgccctcttcttgaatctcttgacattcgtgattgtcattatttgaatga |
115 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| ||| |
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| T |
36327589 |
tgaaaggacacgagctcactgaacttggtgtgcttgccattattgatagctgccctcttcttgagtctcttgacattagtgattgtcattatttgactga |
36327490 |
T |
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| Q |
116 |
aagtttggagaaaagctgcattgatcagattaatgatttgcgcatgccagttcgttataaccatgaagacaa |
187 |
Q |
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| T |
36327489 |
agatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgccaagtcgttatatccatgaagacaa |
36327418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 36336119 - 36335978
Alignment:
| Q |
15 |
atgaaaggacacaagctcactgaacttggtgtgctcgccattattgataaatgccctcttcttgaatctcttgacattcgtgattgtcattatttgaatg |
114 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| | ||||||||| |
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| T |
36336119 |
atgagaggacacaagctcactgaacttggcgtgctcgccattattgataaatgccctcttcttgaatatcttgacattagtttttgtcttaatttgaatg |
36336020 |
T |
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| Q |
115 |
aaagtttggagaaaagctgcattgatcagattaatgatttgc |
156 |
Q |
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|| |||| ||||||| |||||||| ||||| || ||||||| |
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| T |
36336019 |
aagatttgaagaaaaggtgcattgaccagatcaaggatttgc |
36335978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 36320746 - 36320605
Alignment:
| Q |
15 |
atgaaaggacacaagctcactgaacttggtgtgctcgccattattgataaatgccctcttcttgaatctcttgacattcgtgattgtcattatttgaatg |
114 |
Q |
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|||||||||||||| |||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| || |
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| T |
36320746 |
atgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgtcctgttcttgaatctcttgacattagtgattgtcattatttgagtg |
36320647 |
T |
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| Q |
115 |
aaagtttggagaaaagctgcattgatcagattaatgatttgc |
156 |
Q |
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|| |||| |||||| |||||||| ||||| || ||||||| |
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| T |
36320646 |
aagatttgacgaaaaggtgcattgaccagatcaaggatttgc |
36320605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 36325726 - 36325639
Alignment:
| Q |
15 |
atgaaaggacacaagctcactgaacttggtgtgctcgccattattgataaatgccctcttcttgaatctcttgacattcgtgattgtc |
102 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
36325726 |
atgaaaggacacaagctcagtgaacttcgtgtgctcgccataattgataaatgccctcttcttgaatctcttgacattagtgtttgtc |
36325639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 36309194 - 36309083
Alignment:
| Q |
51 |
gccattattgataaatgccctcttcttgaatctcttgacattcgtgattgtcattat------ttgaatgaaagtttggagaaaagctgcattgatcaga |
144 |
Q |
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|||||| ||| ||| |||||||| ||| ||||||||||||||||| || |||||| |||| |||||||||| ||||||| ||||||||||||| |
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| T |
36309194 |
gccattcttgttaagtgccctctgcttaaatctcttgacattcgtcgatgacattatcttgaattgagtgaaagtttgaagaaaaggtgcattgatcaga |
36309095 |
T |
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| Q |
145 |
ttaatgatttgc |
156 |
Q |
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| T |
36309094 |
tcaatgatttgc |
36309083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 16053027 - 16052979
Alignment:
| Q |
41 |
tggtgtgctcgccattattgataaatgccctcttcttgaatctcttgac |
89 |
Q |
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|||| ||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
16053027 |
tggtttgctcgccattcttgataaatgcccttttcttgaatctcttgac |
16052979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 15936214 - 15936262
Alignment:
| Q |
41 |
tggtgtgctcgccattattgataaatgccctcttcttgaatctcttgac |
89 |
Q |
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|||| ||||||||||| |||||||||| ||| ||||||||||||||||| |
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| T |
15936214 |
tggtttgctcgccattcttgataaatggccttttcttgaatctcttgac |
15936262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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