View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_high_21 (Length: 234)
Name: NF15048_high_21
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_high_21 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 85 - 234
Target Start/End: Original strand, 7168567 - 7168716
Alignment:
| Q |
85 |
catctctagaattgtaaacaaccaactcagcttgatacttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaac |
184 |
Q |
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| T |
7168567 |
catctctagaattgtaaacaaccaactcagcttgatacttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaac |
7168666 |
T |
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| Q |
185 |
atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttc |
234 |
Q |
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| T |
7168667 |
atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttc |
7168716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 7168392 - 7168470
Alignment:
| Q |
9 |
ataagaaaaaataatccataaaccttcataaacctcatgcacaagtgacgtaacatagtatctacattattacatgcat |
87 |
Q |
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| T |
7168392 |
ataacaaaaaataatccataaaccttcataaacctcatgcacaagtgacgtaacatagtatctacattattacatgcat |
7168470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 7174250 - 7174391
Alignment:
| Q |
85 |
catctctagaattgtaaacaaccaact-cagcttgatacttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaa |
183 |
Q |
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| T |
7174250 |
catctctagaattgtaaacaaccaacttcatcat-atactctagcagcacttgatcatcctcataaacataaagtgcctttgtataaggatcagaaccaa |
7174348 |
T |
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| Q |
184 |
catctcccatgtaaggaactcggaacaatttagtccaagaatc |
226 |
Q |
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| T |
7174349 |
cacctcccatgtaaggaacacggaacaatctagtccaagaatc |
7174391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 11237867 - 11237730
Alignment:
| Q |
85 |
catctctagaattgtaaacaaccaactcagcttgatacttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaac |
184 |
Q |
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| T |
11237867 |
catctctagaattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggacaacgcccaac |
11237768 |
T |
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| Q |
185 |
atctcccatgtaaggaactcggaacaatttagtccaag |
222 |
Q |
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| T |
11237767 |
attccctatgtaaggaacacggaacaatttagtccaag |
11237730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 7199855 - 7199995
Alignment:
| Q |
85 |
catctctagaattgtaaacaaccaactcagcttgatacttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaac |
184 |
Q |
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| T |
7199855 |
catccctagaattgtaaagaaccaactttgactgacactctagcagcacttgatcatcctcataaacataaaatgccttggtataaggaccagaaccaac |
7199954 |
T |
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| Q |
185 |
atctcccatgtaaggaactcggaacaatttagtccaagaat |
225 |
Q |
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| T |
7199955 |
accttccatgtaaggaacacggaacaatctagcccaagaat |
7199995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 7156168 - 7156210
Alignment:
| Q |
184 |
catctcccatgtaaggaactcggaacaatttagtccaagaatc |
226 |
Q |
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| T |
7156168 |
catctcccatgtaaggaacacggaacaatttagcccaagaatc |
7156210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 11238029 - 11237995
Alignment:
| Q |
32 |
cttcataaacctcatgcacaagtgacgtaacatag |
66 |
Q |
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| T |
11238029 |
cttcataaacctcatgcacaagtgacataacatag |
11237995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 6538911 - 6538859
Alignment:
| Q |
182 |
aacatctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttc |
234 |
Q |
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| T |
6538911 |
aacacctcccatgttagaaacactgaacaatttagtccaagaatctttatttc |
6538859 |
T |
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