View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15048_high_6 (Length: 435)

Name: NF15048_high_6
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15048_high_6
NF15048_high_6
[»] chr5 (3 HSPs)
chr5 (9-420)||(41516103-41516516)
chr5 (168-319)||(41525165-41525326)
chr5 (364-413)||(8469812-8469861)
[»] chr2 (7 HSPs)
chr2 (364-420)||(41320009-41320065)
chr2 (368-420)||(13545362-13545414)
chr2 (364-420)||(13544598-13544654)
chr2 (364-420)||(41320775-41320831)
chr2 (366-413)||(34239583-34239630)
chr2 (364-413)||(34238817-34238866)
chr2 (365-413)||(23288917-23288965)
[»] chr1 (7 HSPs)
chr1 (364-420)||(17238471-17238527)
chr1 (364-420)||(6631316-6631372)
chr1 (364-420)||(6632080-6632136)
chr1 (364-420)||(17237705-17237761)
chr1 (364-412)||(29255416-29255464)
chr1 (363-413)||(19990275-19990325)
chr1 (363-416)||(16386321-16386374)
[»] chr3 (5 HSPs)
chr3 (364-420)||(52362640-52362696)
chr3 (364-420)||(16674294-16674350)
chr3 (368-413)||(23310504-23310549)
chr3 (368-413)||(32982272-32982317)
chr3 (364-413)||(37065967-37066016)
[»] chr4 (2 HSPs)
chr4 (363-412)||(32527551-32527600)
chr4 (295-361)||(31593042-31593108)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 41516103 - 41516516
Alignment:
Q  9 agatgaagatggtgcttaaaaacgagaagaattgggggaaaaagcgattatgaaggtggtgcttaaagccaaaggaaatgggtggnnnnnnnnnn--gtg 106  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||    
T  41516103 agatggagatggtgcttaaaaaccagaagaattgggggaaaaagcgattatgaaggtggtgcttaaagccaaaggaaatgggtggaaaaaaaaaaaagtg 41516202  T
Q  107 attataagagtgtgaacaaaactacaaccactatcaattcctacaaaaaagtannnnnnncgtatgtagtgaagttggtaaaaaacaatttcctcatttc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  41516203 attataagagtgtgaacaaaactacaaccactatcaattcctacaaaaaagtatttttttcgtatgtagtgaagttggtaaaaaacaatttcctcatttc 41516302  T
Q  207 tctctttggtttttaacatgttccttcacataagataattaaattaaattaaatgtgaccacctattcaaacattttgatttttagaagactttttctag 306  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41516303 tctctttggtttttcacatgttccttcgcataaaataattaaattaaattaaatgtgaccacctattcaaacattttgatttttagaagactttttctag 41516402  T
Q  307 ttacaccattaaaatattcggttacaatcaaaattttattaacattttataataaagggagggatattttgactctaagagtatgtttatagacttactc 406  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  41516403 ttacacctttaaaatatccggttacaatcaaaattttattaacattttataataaggggagggatattttgactctaagagtatatttatagacttactc 41516502  T
Q  407 caaatctccacctt 420  Q
    ||||||||||||||    
T  41516503 caaatctccacctt 41516516  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 168 - 319
Target Start/End: Original strand, 41525165 - 41525326
Alignment:
Q  168 gtatgtagtgaagttggtaaaa-aacaatttcctcatttctctctttggtttttaaca-tgttccttcacataagataa----------ttaaattaaat 255  Q
    ||||||||||||||||| |||| |||||||||||||||| |||||||||||||| ||| |||||||||  |||||||||          |||||||||||    
T  41525165 gtatgtagtgaagttggcaaaaaaacaatttcctcatttttctctttggtttttcacattgttccttcggataagataattaaattaacttaaattaaat 41525264  T
Q  256 taaatgtgaccacctattcaaacattttgatttttagaagactttttctagttacaccattaaa 319  Q
    |||| ||||||| |||||||||||  ||||||||||||||| ||||||| |||||||| |||||    
T  41525265 taaacgtgaccatctattcaaaca--ttgatttttagaagattttttctcgttacacccttaaa 41525326  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 8469861 - 8469812
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatct 413  Q
    |||||||||||||||||| |||||||  ||||||||||||||| ||||||    
T  8469861 ggagggatattttgactccaagagtaaatttatagacttactctaaatct 8469812  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 41320009 - 41320065
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatctccacctt 420  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  41320009 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctt 41320065  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 13545414 - 13545362
Alignment:
Q  368 ggatattttgactctaagagtatgtttatagacttactccaaatctccacctt 420  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  13545414 ggatattttgactccaagagtaagtttatagacttactccaaatctccacctt 13545362  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 13544598 - 13544654
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatctccacctt 420  Q
    |||||||||||||||||  ||||||| ||||||||||||| ||||||||||||||||    
T  13544598 ggagggatattttgacttcaagagtaagtttatagacttattccaaatctccacctt 13544654  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 41320831 - 41320775
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatctccacctt 420  Q
    |||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  41320831 ggagagatattttgactccaatagtaagtttatagacttactccaaatctccacctt 41320775  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 413
Target Start/End: Complemental strand, 34239630 - 34239583
Alignment:
Q  366 agggatattttgactctaagagtatgtttatagacttactccaaatct 413  Q
    |||||||||||||||| ||||||| || |||||| |||||||||||||    
T  34239630 agggatattttgactccaagagtaagtctatagatttactccaaatct 34239583  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 34238817 - 34238866
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatct 413  Q
    |||| ||||||||||||| || |||| || ||||||||||||||||||||    
T  34238817 ggagagatattttgactccaaaagtaagtctatagacttactccaaatct 34238866  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 23288965 - 23288917
Alignment:
Q  365 gagggatattttgactctaagagtatgtttatagacttactccaaatct 413  Q
    ||||||||||||||||||||||||| || ||   |||||||||||||||    
T  23288965 gagggatattttgactctaagagtaagtgtaataacttactccaaatct 23288917  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 17238527 - 17238471
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatctccacctt 420  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  17238527 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctt 17238471  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 6631316 - 6631372
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatctccacctt 420  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  6631316 ggagggatattttgactccaagggtaagtttatagacttactccaaatctccacctt 6631372  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 6632136 - 6632080
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatctccacctt 420  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||    
T  6632136 ggagggatatttagactccaagagtaagtttatagacttactccaaatctccacctt 6632080  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 17237705 - 17237761
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatctccacctt 420  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||| ||||||||    
T  17237705 ggagggatattttgactgcaagagtaagtttatagacttactccaaatatccacctt 17237761  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 29255464 - 29255416
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatc 412  Q
    |||||||||| ||||||||||||||| |||| ||||||||| |||||||    
T  29255464 ggagggatatattgactctaagagtaagtttctagacttacaccaaatc 29255416  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 19990275 - 19990325
Alignment:
Q  363 gggagggatattttgactctaagagtatgtttatagacttactccaaatct 413  Q
    ||||||||||| ||||||| ||||||| || || |||||||||||||||||    
T  19990275 gggagggatatattgactccaagagtaagtctaaagacttactccaaatct 19990325  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 16386374 - 16386321
Alignment:
Q  363 gggagggatattttgactctaagagtatgtttatagacttactccaaatctcca 416  Q
    |||||||||||||||||||||||||||  | || ||| ||||||||||| ||||    
T  16386374 gggagggatattttgactctaagagtaactctaaagagttactccaaatttcca 16386321  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 52362640 - 52362696
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatctccacctt 420  Q
    |||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  52362640 ggagggatattttgactccaagagtaagtttatagacctactccaaatctccacctt 52362696  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 16674350 - 16674294
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatctccacctt 420  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  16674350 ggagagatattttgactcaaagagtaagtttatagacttactccaaatctacacctt 16674294  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 23310504 - 23310549
Alignment:
Q  368 ggatattttgactctaagagtatgtttatagacttactccaaatct 413  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||    
T  23310504 ggatattttgactccaagagtaagtctatagacttactccaaatct 23310549  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 32982272 - 32982317
Alignment:
Q  368 ggatattttgactctaagagtatgtttatagacttactccaaatct 413  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||    
T  32982272 ggatattttgactccaagagtaagtctatagacttactccaaatct 32982317  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 37065967 - 37066016
Alignment:
Q  364 ggagggatattttgactctaagagtatgtttatagacttactccaaatct 413  Q
    |||||||||||||||||| ||||||| || | || |||||||||||||||    
T  37065967 ggagggatattttgactccaagagtaagtctctaaacttactccaaatct 37066016  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 32527600 - 32527551
Alignment:
Q  363 gggagggatattttgactctaagagtatgtttatagacttactccaaatc 412  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||||||    
T  32527600 gggagagatattttgactctaagagtaagtttgtagacttactccaaatc 32527551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 361
Target Start/End: Complemental strand, 31593108 - 31593042
Alignment:
Q  295 gactttttctagttacaccattaaaatattcggttacaatcaaaattttattaacattttataataa 361  Q
    ||||||||||| ||||||| || ||| ||| ||||| |  |||||||| ||||||||||||||||||    
T  31593108 gactttttctacttacaccctttaaacattaggttagacccaaaatttcattaacattttataataa 31593042  T

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