View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_10 (Length: 380)
Name: NF15048_low_10
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 35288383 - 35288732
Alignment:
| Q |
19 |
taaaatgctatatgatggagattgtccattatgcatgcgagaggttaatctttgtttcaataacaattaacaagtgtggttgttttgttcataaccacat |
118 |
Q |
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| T |
35288383 |
taaaatgctatatgatggagattgtccattatgcatgcgagaggttaatctttgtttcaataacaattaacaagtgtggttgttttgttcataaccacat |
35288482 |
T |
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| Q |
119 |
aattctcatgttatatagttagttagtgaaccttgtttcatctcattcattgatagagttttttgctctttgttgttatttgtcattttaggtgaatatg |
218 |
Q |
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| T |
35288483 |
aattctcatgttatatagttagttagtgaaccttgtttcatctcattcattgatagagtcttttgctctttgttgttatttgtcattttaggtgaatatg |
35288582 |
T |
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| Q |
219 |
ctacgagagaggaacacgagttatggcaccatcaagtttgttgatataggctcagatgattactctcccgacgagaatcagggcctcgactatcaaactg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35288583 |
ctacgagagaggaacacgagttatggcaccatcaagtttgttgatataggctcagatgattactctcccgacgagaatcagggcctcgactatcaaactg |
35288682 |
T |
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| Q |
319 |
ttagtcccttctctatggcctcgaagctgatttatttatttttggtttca |
368 |
Q |
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| T |
35288683 |
ttagtcccttctctatggcctcgaagctgatttatttatttttgctttca |
35288732 |
T |
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