View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_11 (Length: 351)
Name: NF15048_low_11
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 27419862 - 27420182
Alignment:
| Q |
14 |
agaaaatcgatattgaacacaagatcatgatatttgcttaccagaacagaacttcgcggtccctgcctt--taattaagtatcaaggtcaattaaacttt |
111 |
Q |
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| T |
27419862 |
agaaaatcgatattgaacacaagatcatgatatttgcttaccagaacagaacttcgcggtccctgccttcttaattaagtatcaaggtcaattaaacttt |
27419961 |
T |
|
| Q |
112 |
ctagtggggtgatgtgttggtgtattatctgttatgacatttagtctttgtgaaatacttctaagacaacaccatgtgatcttatatatgctcttgcctc |
211 |
Q |
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| T |
27419962 |
ctagtggggtgatgtgttggtgtattatctgttatgacatttagtctttgtgaaatacttctaagacaacaccatgtgatcttatatatgctcttgcctc |
27420061 |
T |
|
| Q |
212 |
cttgtagattctttgaccctaacctaaattttaattctatactataggatacccctccttcaccaatcattcaagtaggcaactgtttctcaaaattagt |
311 |
Q |
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| T |
27420062 |
cttgtagattctttgaccctaacctaaattttaattctatactataggatacccctccttcaccaatcattcaagtaggcaactgtttctcaaaattagt |
27420161 |
T |
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| Q |
312 |
tcttacatctatatatattca |
332 |
Q |
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||||||||||||||||||||| |
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| T |
27420162 |
tcttacatctatatatattca |
27420182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 38 - 332
Target Start/End: Original strand, 27415099 - 27415401
Alignment:
| Q |
38 |
tcatgatatttgcttaccagaacagaacttcgcggtccctgcctt--taattaagtatcaaggtcaattaaactttctagtggggtgatgtgttggtgta |
135 |
Q |
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| T |
27415099 |
tcatgatatttgcataccaggacagaagtttgcggtccttgccttcttaattaagtatcaaggtcaattaaactttctagtgaggtgatatgttggtgta |
27415198 |
T |
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| Q |
136 |
ttatctgttatgacatttagtctttg--------tgaaatacttctaagacaacaccatgtgatcttatatatgctcttgcctccttgtagattctttga |
227 |
Q |
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| T |
27415199 |
ttatctgtcatgacatttggtctttgtgaaagtctgaaagacttccaagacaataccatgtgatcttatatatcctcttgtctctttgtatattctttgt |
27415298 |
T |
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| Q |
228 |
ccctaacctaaattttaattctat---actataggatacccctccttcaccaatcattcaagtaggcaactgtttctcaaaattagttcttacatctata |
324 |
Q |
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||| ||||||| | || |||| ||||||||||| | |||||||||||||||||||||| |||||||||||||| || | ||||| ||||||| |
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| T |
27415299 |
ccccaacctaa--tcctatactataggactataggata---caccttcaccaatcattcaagtagccaactgtttctcaatatgaattctttcatctatt |
27415393 |
T |
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| Q |
325 |
tatattca |
332 |
Q |
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|||||||| |
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| T |
27415394 |
tatattca |
27415401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 27412303 - 27412354
Alignment:
| Q |
171 |
tctaagacaacaccatgtgatcttatatatgctcttgcctccttgtagattc |
222 |
Q |
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| T |
27412303 |
tctaagacaataccatgtgatcttatatatgctcttgtctccttgtagattc |
27412354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 27422850 - 27422901
Alignment:
| Q |
171 |
tctaagacaacaccatgtgatcttatatatgctcttgcctccttgtagattc |
222 |
Q |
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| T |
27422850 |
tctaagacaataccatgtgatcttatatatgctcttgtctccttgtagattc |
27422901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 27570560 - 27570509
Alignment:
| Q |
171 |
tctaagacaacaccatgtgatcttatatatgctcttgcctccttgtagattc |
222 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
27570560 |
tctaagacaataccatgtgatcttatatatgctcttgtctccttgtagattc |
27570509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 27412189 - 27412266
Alignment:
| Q |
39 |
catgatatttgcttaccagaacagaacttcgcggtccctgcctt--taattaagtatcaaggtcaattaaactttcta |
114 |
Q |
| |
|
|||||||||||| |||||| ||||||||| | ||||| ||| || |||||||||||||||||||||||||||||||| |
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| T |
27412189 |
catgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttcta |
27412266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 27570674 - 27570597
Alignment:
| Q |
39 |
catgatatttgcttaccagaacagaacttcgcggtccctgcctt--taattaagtatcaaggtcaattaaactttcta |
114 |
Q |
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|||||||||||| |||||| ||||||||| | ||||| ||| || |||||||||||||||||||||||||||||||| |
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| T |
27570674 |
catgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttcta |
27570597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 27425344 - 27425420
Alignment:
| Q |
39 |
catgatatttgcttaccagaacagaacttcgcggtccctgcctt--taattaagtatcaaggtcaattaaactttct |
113 |
Q |
| |
|
|||||||||||| |||| |||| |||||| |||||||||||||| ||| |||||| |||||| ||||||||||||| |
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| T |
27425344 |
catgatatttgcatacctgaacggaactttgcggtccctgccttgctaaataagtaacaaggttaattaaactttct |
27425420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 27566431 - 27566376
Alignment:
| Q |
171 |
tctaagacaacaccatgtgatcttatatatgctcttgcctcc-ttgtagattcttt |
225 |
Q |
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|||||||||| |||||||||||| |||||||||||| |||| ||||||||||||| |
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| T |
27566431 |
tctaagacaattccatgtgatcttgtatatgctcttgtctcctttgtagattcttt |
27566376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 27566551 - 27566481
Alignment:
| Q |
45 |
atttgcttaccagaacagaacttcgcggtccctgcctt--taattaagtatcaaggtcaattaaactttct |
113 |
Q |
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|
|||||| ||||| |||||||||| ||||||||||| || ||| |||||| || ||||||||||||||||| |
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| T |
27566551 |
atttgcataccataacagaactttgcggtccctgcattgctaaataagtaacatggtcaattaaactttct |
27566481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 27422742 - 27422813
Alignment:
| Q |
45 |
atttgcttaccagaacagaacttcgcggtccctgcctt--taattaagtatcaaggtcaattaaactttcta |
114 |
Q |
| |
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|||||| |||||||||| ||||| ||| |||||||| | |||| || ||| |||||||||||||||||||| |
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| T |
27422742 |
atttgcataccagaacaaaactttgcgatccctgccatcctaatcaaatatgaaggtcaattaaactttcta |
27422813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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