View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_13 (Length: 336)
Name: NF15048_low_13
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 38473839 - 38474038
Alignment:
| Q |
14 |
atatacttggaagaacatcgtgatgttatatatatagaataactccacctatgttatatatcttgactagtgatttgggactaaaacaccatatttctac |
113 |
Q |
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| T |
38473839 |
atatacttggaagaacatcgtgatgttatatatatagaataacaccacctatgttatatatcttgactagtgatttgggactaaaacaccatatttctac |
38473938 |
T |
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| Q |
114 |
tatctacgatctacacctcacttgccacttgtactcaatgctaaaaaacttgcgcaacaatttctcatcgcttttcatagctagtaaactttcttttgtt |
213 |
Q |
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| T |
38473939 |
tatctacgatctacacctcacttgccacttgtactcaatgctaaaaaacttgcgcaacaatttctcatcgcttttcatagctagtaaactttcttttgtt |
38474038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 38474146 - 38474257
Alignment:
| Q |
210 |
tgttctgtttaaattttattaacattgtaacaagggccaggttgaatcaagataacatcaacttcaaattcatcaagtgcaatcaacattttacatgact |
309 |
Q |
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| T |
38474146 |
tgttctgtttaaattttattaacattgtaacaagagccaggttgaatcaagataacattaacttcaaattcatcaagtgcaatcaacattttacatgact |
38474245 |
T |
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| Q |
310 |
gatggaagaaca |
321 |
Q |
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| T |
38474246 |
gatggaagaaca |
38474257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 38489744 - 38489824
Alignment:
| Q |
40 |
tatatatatagaataactccacctatgttatatatcttgactagtgatttgggactaaaacaccatatttctactatctac |
120 |
Q |
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| T |
38489744 |
tatatatatagaataactctatgtatgttatgtatctttactagcggtgtgggactaaaacaccatatttctactctctac |
38489824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 38490000 - 38490038
Alignment:
| Q |
283 |
caagtgcaatcaacattttacatgactgatggaagaaca |
321 |
Q |
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| T |
38490000 |
caagtgcaatcaacattttacatgtctgatggaagaaca |
38490038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 34572980 - 34573049
Alignment:
| Q |
246 |
ccaggttgaatcaagataacatcaacttcaaattcatcaagtgcaatcaacattttacatgactgatgga |
315 |
Q |
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| T |
34572980 |
ccaggttcaatcaagatgacatcaagttcaatttcataaagtgcaatcaatgttttacaagtctgatgga |
34573049 |
T |
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