View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_15 (Length: 323)
Name: NF15048_low_15
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 32804194 - 32803879
Alignment:
| Q |
1 |
acactttattttaacaaataactcgattatcatagaa---------tatcaataaacgacaaaatcaataaagtaagtaagnnnnnnn-tattttatctc |
90 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32804194 |
acactttattttaacaaatgactcgattatcatagaacgtatggaatatcaataaacgacaaaatcaataaagtaagtaagaaaacaaatattttatctc |
32804095 |
T |
|
| Q |
91 |
cccatgtcaacaacaacacagctcacaccaacagtaatgaaatcaatttattcaaaaacactttttctctccttaatttgtcctcctcaaacagttagtt |
190 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32804094 |
cccatgtcaacaacaacacagctcacactaacagtaatgaaatcaatttattcaaaaacactttttctctccttaatttgtcctcctcaaacagttagtt |
32803995 |
T |
|
| Q |
191 |
agtttcgtgttcttctcaaattacttcattattataacatctttgtctcactgtctatgttctaaatttttatttcttaattctctctctttttacttga |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32803994 |
agtttcgtgttcttctcaaattacttcattattataacatctttgtctcactgtctatgttctaaatttttatttcttaattctctctctttttacttga |
32803895 |
T |
|
| Q |
291 |
gttgagtctctgaaag |
306 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
32803894 |
gttgagtctctgaaag |
32803879 |
T |
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