View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_16 (Length: 290)
Name: NF15048_low_16
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 41830287 - 41830021
Alignment:
| Q |
17 |
aaaattaaatgttaaagaatatagaaaaattgcatgcctttggactggaggacgaaagcagctccggcgtcgtcttcatcttgagggtggtggtgattct |
116 |
Q |
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| T |
41830287 |
aaaattaaatgttgaagaatatagaaaaattgcatgcctttggactggaggacgaaagcagctccggcgtcgtcttcatcttgagggtggtggtgattct |
41830188 |
T |
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| Q |
117 |
gattctccttaggtgggtctgccatggcgtgagcttagccacgcacgccaatagagagaacttagttaggagaatcaattttccattatttgaaaaagtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41830187 |
gattctccttaggtgggtctgccatggcgtgagcttagccacgcacgccaatagagagaac----ttaggagaatcaattttccattatttgaaaaagtg |
41830092 |
T |
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| Q |
217 |
tactatgtgtgc----ttaattattattattatttggcctacaaaattgcctaacgcgtggctctgtgctc |
283 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41830091 |
tactatgtgtgcttaattaattattattattatttggcctacaaaattgcctaacgcgtggctttgtgctc |
41830021 |
T |
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