View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15048_low_17 (Length: 274)

Name: NF15048_low_17
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15048_low_17
NF15048_low_17
[»] chr4 (6 HSPs)
chr4 (10-256)||(42743290-42743545)
chr4 (10-256)||(42752649-42752904)
chr4 (40-196)||(42762147-42762308)
chr4 (192-255)||(42762462-42762525)
chr4 (198-255)||(42769345-42769402)
chr4 (202-255)||(42734966-42735019)
[»] chr5 (1 HSPs)
chr5 (19-251)||(23040934-23041170)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 42743290 - 42743545
Alignment:
Q  10 aaatgaaagtattcttacgcctctaccgttgacatatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgct 109  Q
    |||||||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42743290 aaatgaaagtattcttacgcttctcccgctgacacatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgct 42743389  T
Q  110 ctgaaaggctctctccctaacaatgacaatttcaaacaatt----aaacttac-----taaagaattaaaataacaaaggaaattagagatataaacaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||    ||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  42743390 ctgaaaggctctctccctaacaatgacaatttcaaacaattaattaaacttactaaattaaagaattaaaataacaaaggaaattagagatataaacaat 42743489  T
Q  201 ataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatct 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42743490 ataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatct 42743545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 42752649 - 42752904
Alignment:
Q  10 aaatgaaagtattcttacgcctctaccgttgacatatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgct 109  Q
    |||||||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42752649 aaatgaaagtattcttacgcttctcccgctgacacatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgct 42752748  T
Q  110 ctgaaaggctctctccctaacaatgacaatttcaaacaatt----aaacttac-----taaagaattaaaataacaaaggaaattagagatataaacaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||    ||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  42752749 ctgaaaggctctctccctaacaatgacaatttcaaacaattaattaaacttactaaattaaagaattaaaataacaaaggaaattagagatataaacaat 42752848  T
Q  201 ataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatct 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42752849 ataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatct 42752904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 42762147 - 42762308
Alignment:
Q  40 gacatatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgctctgaaaggctctctccctaacaatgacaat 139  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||| | |||    
T  42762147 gacacatgatcaaatttgacatcagcagcacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaat 42762246  T
Q  140 ttcaaac----aattaaacttactaaaga-attaaaataacaaaggaaattagagatataaa 196  Q
    |||||||    |||||| ||||||||| | |||||||||||||||||| |||||||||||||    
T  42762247 ttcaaacaagtaattaaccttactaaaaatattaaaataacaaaggaagttagagatataaa 42762308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 42762462 - 42762525
Alignment:
Q  192 ataaacaatataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatc 255  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  42762462 ataaacaatataccttgagtatttttttgttaccaagaataacataacttgtgaaatctctatc 42762525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 42769345 - 42769402
Alignment:
Q  198 aatataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatc 255  Q
    |||||||||||| ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  42769345 aatataccttgagtattttcttgttaccaagagtaacataactagtgaattctctatc 42769402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 42735019 - 42734966
Alignment:
Q  202 taccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatc 255  Q
    |||||||| |||||||||||||||||| | ||||||||||||||| ||||||||    
T  42735019 taccttgagtattttcttgttaccaagtacaacataacttgtgaagtctctatc 42734966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 23041170 - 23040934
Alignment:
Q  19 tattcttacgcctctaccgttgacatatgatcaaatttggcatcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgctctgaaaggc 118  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||  |||||| |||||||||||||||||    
T  23041170 tattcttacgcttctaccgttgacacatgatcaaatttggcatcagcagcactaatcaatggatacaacttatgccgcggtagttcatgctctgaaaggc 23041071  T
Q  119 tctctccctaacaatgacaatttcaaacaa----ttaaacttactaaagaattaaaataacaaaggaaattagagatataaacaatataccttgaatatt 214  Q
    ||| ||||||||||||||| ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23041070 tctttccctaacaatgacagtttcaaacaattaattaaacttactaaagaattaaaataacaaaggaaattagagatataaacaatataccttgagtatt 23040971  T
Q  215 ttcttgttaccaagaataacataacttgtgaaatctc 251  Q
    ||||||||||||||||||||||| |||||||||||||    
T  23040970 ttcttgttaccaagaataacatagcttgtgaaatctc 23040934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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