View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_18 (Length: 254)
Name: NF15048_low_18
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 2034555 - 2034342
Alignment:
| Q |
21 |
agtttgagggatatagcttacttggaactagtcaaatagtaaagtaagcaataataaaaggcacgcaatacataacacctcaaataagatggattatgga |
120 |
Q |
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| T |
2034555 |
agtttgagggatatagcttacttggaactagtcaaatagtaaagtaagcaataataaaaggcacgcaatacataacacctcaaataagatggattatgga |
2034456 |
T |
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| Q |
121 |
atataacgccggctatatgcttgaaaccaagttgaaaatgcaagagatttgataaactagtctaactctaaatatacatcaaatggcttaatgtgttcta |
220 |
Q |
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| T |
2034455 |
atataacgccggctatatgcttgaaaccaagttgaaaatgcaagagatttgataaactagtctaactctaaatatacatcaaatggcttaatgtgttcta |
2034356 |
T |
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| Q |
221 |
ttttattacctttg |
234 |
Q |
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|||||||||||||| |
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| T |
2034355 |
ttttattacctttg |
2034342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 2058651 - 2058618
Alignment:
| Q |
132 |
gctatatgcttgaaaccaagttgaaaatgcaaga |
165 |
Q |
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| T |
2058651 |
gctatatgcttgaaaccaagttaaaaatgcaaga |
2058618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 2051187 - 2051147
Alignment:
| Q |
132 |
gctatatgcttgaaaccaagttgaaaatgcaagagatttga |
172 |
Q |
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| T |
2051187 |
gctatatgcttgaagccaagttgaaaatgcaggagacttga |
2051147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 17183007 - 17183074
Alignment:
| Q |
141 |
ttgaaaccaagttgaaaatgcaagagatttgataaactagtctaactctaaatatacatcaaatggct |
208 |
Q |
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| T |
17183007 |
ttgaaaccaagttgaaaatgcaagagatttgattaactagtctaactctaaatatacatcaaatggct |
17183074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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