View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_2 (Length: 587)
Name: NF15048_low_2
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_2 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 42762511 - 42761921
Alignment:
| Q |
1 |
aagttatgttattcttggtaacnnnnnnntactcaaggtatattgtttattacttacacctaatattttatttgaaaacgatcatcatatat--gataga |
98 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
42762511 |
aagttatgttattcttggtaacaaaaaaatactcaaggtatattgtttattacttacaccttatattttatttgaaaacgatcatcatatatatgataga |
42762412 |
T |
|
| Q |
99 |
aaaagttaaaataagtaaggaaattcagatatggaaaagacaaaatttgtatttttgattatgtcgctaatcattagaaatgtaaaatttggggaacaan |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
42762411 |
aaaagttaaaataagtaaggaaattcagatatggaaaagacaaaatttgtatttttgattatatcgctaagcattagaaatgtaaaatttggggaacaat |
42762312 |
T |
|
| Q |
199 |
nnnnnnatatctctaacttcctttgttattttaatatttttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagctt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42762311 |
ttttttatatctctaacttcctttgttattttaatatttttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagctt |
42762212 |
T |
|
| Q |
299 |
gaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtctccagaggatgcgtaagaatgcttttgctttatgt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42762211 |
gaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtctgcagaggatgcgtaagaatgcttttgctttatgt |
42762112 |
T |
|
| Q |
399 |
agaccttctcaaataacnnnnnnnnatagtaatctataagtttgatcttgtaacttaagtaataaattttcaatcacctcagagactgttttaaaatgac |
498 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42762111 |
tgaccttctcaaatatcttttttttatagtaatctataagtttgatcttgtaacttaagtaataaattttcaatctcctcagagactgttttaaaatgac |
42762012 |
T |
|
| Q |
499 |
tatttca--nnnnnnnnnnnnnnnnngcaatcatggagctcttgatccacataaggcaaagggaaatatattggtatgtcttcgaggtgac |
587 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42762011 |
tatttcattttttttagttcttttttgcaatcatggagctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgac |
42761921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 205 - 363
Target Start/End: Complemental strand, 42743482 - 42743320
Alignment:
| Q |
205 |
atatctctaacttcctttgttattttaatatttt----tagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttga |
300 |
Q |
| |
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|||||||||| |||||||||||||||||| ||| ||||||| ||||||| |||||||||||| | |||||||||||| ||||||||||||| ||| |
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| T |
42743482 |
atatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatga |
42743383 |
T |
|
| Q |
301 |
attaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtc |
363 |
Q |
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| T |
42743382 |
attaccgcctcataagttgtacccattgattagtgctgctgatgccaaatttgatcatgtgtc |
42743320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 205 - 363
Target Start/End: Complemental strand, 42752841 - 42752679
Alignment:
| Q |
205 |
atatctctaacttcctttgttattttaatatttt----tagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttga |
300 |
Q |
| |
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|||||||||| |||||||||||||||||| ||| ||||||| ||||||| |||||||||||| | |||||||||||| ||||||||||||| ||| |
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| T |
42752841 |
atatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttcagagcatga |
42752742 |
T |
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| Q |
301 |
attaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtc |
363 |
Q |
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| T |
42752741 |
attaccgcctcataagttgtacccattgattagtgctgctgatgccaaatttgatcatgtgtc |
42752679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 265 - 390
Target Start/End: Original strand, 42735319 - 42735444
Alignment:
| Q |
265 |
tttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtct |
364 |
Q |
| |
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|||||| |||||||||||||||||||||||| | | ||||||||||||||||||| ||||||||||||| ||| ||| ||| ||||| |||| ||| |
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| T |
42735319 |
tttttaatgttagggagctagcctttcagagtctcacttaccacctcataagttgtttccattgataagtggtgcaaatgccaacgttgataatgtatct |
42735418 |
T |
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| Q |
365 |
ccagaggatgcgtaagaatgcttttg |
390 |
Q |
| |
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| || | ||||||||||||||||| |
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| T |
42735419 |
gccgaacaagcgtaagaatgcttttg |
42735444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 42769146 - 42769028
Alignment:
| Q |
265 |
tttttattgttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtct |
364 |
Q |
| |
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|||| |||| ||||||||||||||||||||| | || |||||||||||||| |||||||| |||||||| | ||||| |||| ||||| || ||| |
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| T |
42769146 |
ttttaattgatagggagctagcctttcagagtcccacttgccacctcataagttctacccattaataagtgcagttgatgccaaagctgatcgtgcatct |
42769047 |
T |
|
| Q |
365 |
ccagaggatgcgtaagaat |
383 |
Q |
| |
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|||| ||||||||||||| |
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| T |
42769046 |
tcagatgatgcgtaagaat |
42769028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 42716787 - 42716706
Alignment:
| Q |
274 |
ttagggagctagcctttcagagcttgaattaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgat |
355 |
Q |
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|||||| ||||||||||||||| | ||||| | ||| |||||||||| |||||||||| || |||||||||||||| |||| |
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| T |
42716787 |
ttagggtgctagcctttcagagttggaattgctgcctaataagttgtatccattgataactggtgctgatgtcaaatatgat |
42716706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 578
Target Start/End: Original strand, 42735561 - 42735610
Alignment:
| Q |
529 |
atggagctcttgatccacataaggcaaagggaaatatattggtatgtctt |
578 |
Q |
| |
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|||| ||||||||||| ||||||||| | ||||| ||||||||||||||| |
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| T |
42735561 |
atggggctcttgatcctcataaggcacatggaaaaatattggtatgtctt |
42735610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 42743146 - 42743097
Alignment:
| Q |
535 |
ctcttgatccacataaggcaaagggaaatatattggtatgtcttcgaggt |
584 |
Q |
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| T |
42743146 |
ctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggt |
42743097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 42752505 - 42752456
Alignment:
| Q |
535 |
ctcttgatccacataaggcaaagggaaatatattggtatgtcttcgaggt |
584 |
Q |
| |
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|||||||| | ||||| ||||||||||| |||||||||||||||| |||| |
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| T |
42752505 |
ctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggt |
42752456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 205 - 363
Target Start/End: Original strand, 23040992 - 23041149
Alignment:
| Q |
205 |
atatctctaacttcctttgttattttaatatttttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttgaatta |
304 |
Q |
| |
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|||||||||| |||||||||||||||||| | ||||||||| ||||||| |||||||||| | | ||||||||||| ||||||||||||| |||| || |
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| T |
23040992 |
atatctctaatttcctttgttattttaat-tctttagtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcagagcatgaacta |
23041090 |
T |
|
| Q |
305 |
ccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtc |
363 |
Q |
| |
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|| | ||||||||||| |||||||| ||||||||||||| |||||||||||||||||| |
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| T |
23041091 |
ccgcggcataagttgtatccattgattagtgctgctgatgccaaatttgatcatgtgtc |
23041149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 529 - 584
Target Start/End: Original strand, 23041264 - 23041319
Alignment:
| Q |
529 |
atggagctcttgatccacataaggcaaagggaaatatattggtatgtcttcgaggt |
584 |
Q |
| |
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||||| |||||||| | ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
23041264 |
atggatctcttgattctcataaagcaaagggaaaaatattggtatgtcttcgaggt |
23041319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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