View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_21 (Length: 244)
Name: NF15048_low_21
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_21 |
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| [»] scaffold0690 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 9336899 - 9336774
Alignment:
| Q |
68 |
ccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggaca |
167 |
Q |
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| T |
9336899 |
ccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggaca |
9336800 |
T |
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| Q |
168 |
agaaatcaggtcctgctgctcatctc |
193 |
Q |
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| T |
9336799 |
agaaatcaggtcctgctgctcatctc |
9336774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 9363806 - 9363680
Alignment:
| Q |
68 |
ccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggaca |
167 |
Q |
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| T |
9363806 |
ccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatacaagattcaatttaaccatatcgtcgtcaaatgctgccatataaattggaca |
9363707 |
T |
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| Q |
168 |
agaaatcaggtcctgctgctcatctcc |
194 |
Q |
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| T |
9363706 |
agaaatcatgtcctgctgctcatctcc |
9363680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 9243289 - 9243405
Alignment:
| Q |
79 |
aggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtc-aaccatatcatcctcagatgctgccatataaattggacaagaaatcagg |
177 |
Q |
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| T |
9243289 |
aggggtgaaactcgttgagataatttggtacaggatacaaggtttaaatttaactatatcgttgtcaaatgctgccatataaattggacaagaaatcatg |
9243388 |
T |
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| Q |
178 |
tcctgctgctcatctcc |
194 |
Q |
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| T |
9243389 |
tcctgctgctcagctcc |
9243405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 971 - 851
Alignment:
| Q |
66 |
atccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattgga |
165 |
Q |
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| T |
971 |
atccgaaagaataaggggagaaactcgttgagacaatttggtgcaggatacaaggttcaattcaacgacatcatcgtaaaatcctgcaatataaattgga |
872 |
T |
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| Q |
166 |
caagaaatcaggtcctgctgc |
186 |
Q |
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| T |
871 |
caagaaatcatatcctgctgc |
851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 15911134 - 15911254
Alignment:
| Q |
66 |
atccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattgga |
165 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||| | | || |||| |||||||||||| |
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| T |
15911134 |
atccgaaagaataaggggagaaactcgttgagacaatttggtgcaggatacaaggttcaattcaacgacatcatcgtaaaatcctgcaatataaattgga |
15911233 |
T |
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| Q |
166 |
caagaaatcaggtcctgctgc |
186 |
Q |
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| T |
15911234 |
caagaaatcatatcctgctgc |
15911254 |
T |
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