View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_23 (Length: 241)
Name: NF15048_low_23
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21181160 - 21180928
Alignment:
| Q |
1 |
gtaagaagtaaaactagttcaagttgcaactaactcgagtcataacgtaactcatatgatccgttaagcattacaaattttctgacttattacaa----- |
95 |
Q |
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| T |
21181160 |
gtaagaagtaaaactagttcaagttgcaactaactcgagtcataacgtaactcatatgatccgttaagcattaccaattttctgacttatcacatcaact |
21181061 |
T |
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| Q |
96 |
at-------ttactggactaggggatgatttgctaaattttgaagtaggcatgaccatgaaagttaaagactcggaaattactaaagcagacaagggtac |
188 |
Q |
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| T |
21181060 |
ataactctcttatatttctaggggatgatttgctaaattttgaagtaggcatgaccatgaaagttaaagactcggaaattactaaagcagacaagggtgc |
21180961 |
T |
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| Q |
189 |
aaaagttaggaggaaagaagtcaagttgccatt |
221 |
Q |
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| T |
21180960 |
aaaagttaggaggaaagaagtcaagttgccatt |
21180928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 23181567 - 23181678
Alignment:
| Q |
107 |
taggggatgatttgctaaattttgaagtaggcatgaccatgaaagttaa---agactcggaaattactaaagcagacaagggtacaaaagttaggaggaa |
203 |
Q |
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| T |
23181567 |
taggtgatgatttgctcaattttcaagtaggcatgagcatgaaagttaataaagactcagacatt------gcagacaagagtataaaagtaaggaggaa |
23181660 |
T |
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| Q |
204 |
agaagtcaagttgccatt |
221 |
Q |
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| T |
23181661 |
agaagtcaagttgccatt |
23181678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 23188941 - 23189055
Alignment:
| Q |
107 |
taggggatgatttgctaaattttgaagtaggcatgaccatgaaagt---taaagactcggaaattactaaagcagacaagggtacaaaagttaggaggaa |
203 |
Q |
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|||| ||||||||||| |||||| |||||||||||| ||||||||| |||||||||||| ||| | || ||||| ||| |||||| |||||||| |
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| T |
23188941 |
taggcgatgatttgctcaattttcaagtaggcatgagcatgaaagttaataaagactcggacattgc---agacaacaagagtataaaagtgaggaggaa |
23189037 |
T |
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| Q |
204 |
agaagtcaagttgccatt |
221 |
Q |
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|||||||||||||||||| |
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| T |
23189038 |
agaagtcaagttgccatt |
23189055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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