View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_26 (Length: 230)
Name: NF15048_low_26
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7168722 - 7168945
Alignment:
| Q |
1 |
tccttcataagccaaacgtctgaaaatgtatcaccatgagcaagaatacacaagcaatccctcaacacccctaaggttacactattcacagttaccgctc |
100 |
Q |
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| T |
7168722 |
tccttcataagccaaacgtctgaaaacgtatcactatgagcaagaatacacaagcaatccctcaacacccctaaggttacactattcacagttaccgctc |
7168821 |
T |
|
| Q |
101 |
cataatctggctgcaacaggtattgataagtttcctcctccaaatcaagagaaacaatgatccatgaagtatatggatctttagctgccaaccaattaat |
200 |
Q |
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| T |
7168822 |
cataatctggctgcaacaggtattgataagtttcctcctccaaatcaagagaaacaatgatccatgaagtatatggatctttagcagccaaccaattaat |
7168921 |
T |
|
| Q |
201 |
agttccactaacaaatgttcccga |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
7168922 |
agttccactaacaaatgttcccga |
7168945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 11237610 - 11237483
Alignment:
| Q |
97 |
gctccataatctggctgcaacaggtattgataagtttcctcctccaaatcaagagaaacaatgatccatgaagtatat---ggatctttagctgccaacc |
193 |
Q |
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| T |
11237610 |
gctccataatccggctgcaacagctcttgataagtttccttctccaaatcaagagaaacaattatcgatgaagtatatgacgaatcgttagatgccaacc |
11237511 |
T |
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| Q |
194 |
aattaatagttccactaacaaatgttcc |
221 |
Q |
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| T |
11237510 |
aattaacagttccactaacgaattttcc |
11237483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11237712 - 11237636
Alignment:
| Q |
1 |
tccttcataagccaaacgtctgaaaatgtatcaccatgagcaagaatacacaagcaatccctcaacacccctaaggt |
77 |
Q |
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|||| |||||||||||| || |||| |||| || |||||||||||| |||| || |||||||||||| ||||||| |
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| T |
11237712 |
tcctccataagccaaacatcgaaaaaagtatgactatgagcaagaatgcacatgcgatccctcaacactgctaaggt |
11237636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 2678614 - 2678652
Alignment:
| Q |
187 |
gccaaccaattaatagttccactaacaaatgttcccgat |
225 |
Q |
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| T |
2678614 |
gccaaccaattaatagtgccactaacaaattttcccgat |
2678652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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