View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15048_low_28 (Length: 211)

Name: NF15048_low_28
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15048_low_28
NF15048_low_28
[»] chr7 (9 HSPs)
chr7 (2-165)||(7754161-7754325)
chr7 (5-125)||(38603001-38603122)
chr7 (53-125)||(19267369-19267441)
chr7 (4-108)||(30969763-30969868)
chr7 (5-121)||(37757468-37757585)
chr7 (5-121)||(37763216-37763333)
chr7 (53-126)||(34383352-34383426)
chr7 (55-103)||(28984151-28984199)
chr7 (53-121)||(29695175-29695243)
[»] chr6 (3 HSPs)
chr6 (2-125)||(14536112-14536236)
chr6 (2-122)||(14518617-14518736)
chr6 (51-122)||(7479007-7479082)
[»] chr1 (4 HSPs)
chr1 (2-125)||(51672453-51672576)
chr1 (53-125)||(8296173-8296245)
chr1 (22-103)||(18280457-18280539)
chr1 (54-121)||(36554247-36554311)
[»] chr3 (5 HSPs)
chr3 (57-125)||(41417140-41417208)
chr3 (3-82)||(26669181-26669261)
chr3 (51-121)||(8005056-8005127)
chr3 (54-125)||(44253034-44253104)
chr3 (72-125)||(47187649-47187702)
[»] chr5 (2 HSPs)
chr5 (4-121)||(18345696-18345814)
chr5 (2-110)||(11600902-11601010)
[»] chr4 (6 HSPs)
chr4 (4-124)||(29391157-29391274)
chr4 (53-125)||(23499438-23499510)
chr4 (2-125)||(8258825-8258948)
chr4 (2-125)||(8272243-8272366)
chr4 (54-122)||(9521880-9521948)
chr4 (54-98)||(36912767-36912811)
[»] chr2 (2 HSPs)
chr2 (76-125)||(1607790-1607839)
chr2 (53-125)||(3143241-3143313)
[»] chr8 (2 HSPs)
chr8 (76-124)||(7840408-7840455)
chr8 (53-109)||(39421523-39421579)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 7754161 - 7754325
Alignment:
Q  2 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatactta-taacaaatcacgagtgtgttacaataacaatccttgattttctcatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  7754161 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatacttaataataaatcacgagtgtgttacaataacaacccttgattttctcatt 7754260  T
Q  101 ttacacttaactcactttagaggattttgttagatatattatgcctataaaacttgaaaacctct 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7754261 ttacacttaactcactttagaggattttgttagatatattatgcctataaaacttgaaaacctct 7754325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 38603122 - 38603001
Alignment:
Q  5 aatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 103  Q
    ||||||||  ||||||||| |||| ||| ||  ||||||||| ||| ||||||||||||| |||| ||||| |||||||| ||||||||||||   ||||    
T  38603122 aatatcaaccgttaattaaaaaatcaaaggtagatattgtaggtacattataacaaatcatgagtttgttaaaataacaacccttgattttcttgcttta 38603023  T
Q  104 cacttaactcactttagaggat 125  Q
    ||||| ||||||||||||||||    
T  38603022 cacttcactcactttagaggat 38603001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 19267369 - 19267441
Alignment:
Q  53 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 125  Q
    ||||||||||| |||| ||||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  19267369 ataacaaatcatgagtttgttaaaataacaacccttgattttctcaatttacactttactcactttagaggat 19267441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 30969868 - 30969763
Alignment:
Q  4 caatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatttt 102  Q
    |||||||||  |||||||||||||||||  ||| || |||||| ||  | ||||||||||| |||| |||||||||||||| |||||||||||||| |||    
T  30969868 caatatcaaccgttaattaacaaattaagggttgattttgtaggtatatcataacaaatcatgagtttgttacaataacaacccttgattttctcacttt 30969769  T
Q  103 acactt 108  Q
    ||||||    
T  30969768 acactt 30969763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 37757468 - 37757585
Alignment:
Q  5 aatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 103  Q
    ||||||||| ||||||||| |||| ||| ||  ||||||||| ||| ||||||||| ||| |||| ||||| |||||||| | |||||||||||  ||||    
T  37757468 aatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacattataacaagtcatgagtttgttaaaataacaacctttgattttctcgcttta 37757567  T
Q  104 cacttaactcactttaga 121  Q
    ||||| ||| ||||||||    
T  37757568 cacttcactaactttaga 37757585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 37763216 - 37763333
Alignment:
Q  5 aatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 103  Q
    ||||||||| ||||||||| |||| ||| ||  ||||||||| ||| ||||||||| ||| |||| ||||| |||||||| | |||||||||||  ||||    
T  37763216 aatatcaatcgttaattaaaaaatcaaaggtagatattgtaggtacattataacaagtcatgagtttgttaaaataacaacctttgattttctcgcttta 37763315  T
Q  104 cacttaactcactttaga 121  Q
    ||||| ||| ||||||||    
T  37763316 cacttcactaactttaga 37763333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 34383352 - 34383426
Alignment:
Q  53 ataacaaatcacgagtgtgttacaataacaatccttga-ttttctcattttacacttaactcactttagaggatt 126  Q
    ||||||||||| |||| ||||||||| |||||  |||| ||||||||||||| |||| | ||| |||||||||||    
T  34383352 ataacaaatcatgagtttgttacaatgacaatatttgatttttctcattttaaactttattcaatttagaggatt 34383426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 28984199 - 28984151
Alignment:
Q  55 aacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 103  Q
    |||||||||||||| ||||| ||||| || |||||||||||||| ||||    
T  28984199 aacaaatcacgagtttgttataataataacccttgattttctcacttta 28984151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 29695243 - 29695175
Alignment:
Q  53 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttaga 121  Q
    ||||||||||| |||| ||||| ||||||||| ||| |||||  ||||||||| || | ||||||||||    
T  29695243 ataacaaatcatgagtttgttataataacaattcttaatttttacattttacattttattcactttaga 29695175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 14536236 - 14536112
Alignment:
Q  2 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 100  Q
    |||||||| ||||||||||||| |||||||| ||  ||||||||| ||| | |||||||||||||||| |||| ||||||||| | |||||||||||| |    
T  14536236 gacaatattaattgttaattaaaaaattaaaggtagatattgtaggtacatcataacaaatcacgagtttgttgcaataacaacctttgattttctcact 14536137  T
Q  101 ttacacttaactcactttagaggat 125  Q
    |||||||| |||| |||||||||||    
T  14536136 ttacacttcactcgctttagaggat 14536112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 14518736 - 14518617
Alignment:
Q  2 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 100  Q
    ||||||||||| |||||||| | |||||||| |   ||||||||| ||| | ||||||||||| |||| | ||| ||||||||| ||||||||||||| |    
T  14518736 gacaatatcaactgttaatttaaaaattaaaggg--atattgtaggtacatcataacaaatcatgagtttcttataataacaattcttgattttctcact 14518639  T
Q  101 ttacacttaactcactttagag 122  Q
    |||||||| | |||||||||||    
T  14518638 ttacactttattcactttagag 14518617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 7479007 - 7479082
Alignment:
Q  51 ttataacaaatcacgagtgtgttacaataacaa----tccttgattttctcattttacacttaactcactttagag 122  Q
    |||||||||||||||||| ||||| ||||||||    | ||||||||||||| ||||||||| | |||||||||||    
T  7479007 ttataacaaatcacgagtttgttaaaataacaactcttgcttgattttctcactttacactttattcactttagag 7479082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 51672576 - 51672453
Alignment:
Q  2 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 100  Q
    |||||||||||  |||||||||||||||||| ||  |||||| |||||| | ||||||||||| |||| || ||||||||||| | ||||||||||||      
T  51672576 gacaatatcaaccgttaattaacaaattaaa-gtagatattgcagatacatcataacaaatcatgagtttgatacaataacaacctttgattttctcacg 51672478  T
Q  101 ttacacttaactcactttagaggat 125  Q
    |||||||||||||||||||||||||    
T  51672477 ttacacttaactcactttagaggat 51672453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 8296245 - 8296173
Alignment:
Q  53 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 125  Q
    ||||||||||| || || ||||||||||||| |||||||||||||| |||| | |||||||||||||||||||    
T  8296245 ataacaaatcatgaatgagttacaataacaacccttgattttctcactttataattaactcactttagaggat 8296173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 18280457 - 18280539
Alignment:
Q  22 aacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 103  Q
    ||||||||||| || |||||||||  ||| | |||||||||||  | | |||||||||||||| |||||||||||||| ||||    
T  18280457 aacaaattaaaggtaaatattgtaagtacatcataacaaatcataaatatgttacaataacaacccttgattttctcacttta 18280539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 36554247 - 36554311
Alignment:
Q  54 taacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttaga 121  Q
    |||||||||| || | |||||||||||||||   ||||||| |||||||| ||| |||||||||||||    
T  36554247 taacaaatcatgaatttgttacaataacaat---tgattttttcattttatactcaactcactttaga 36554311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 41417208 - 41417140
Alignment:
Q  57 caaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 125  Q
    |||||||||||| |||||||||||||| |||||||||||| | |||||||||  ||| |||||||||||    
T  41417208 caaatcacgagtttgttacaataacaacccttgattttcttactttacacttttctcgctttagaggat 41417140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 26669261 - 26669181
Alignment:
Q  3 acaatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataaca 82  Q
    ||||||||||||||||||||| |||||||  || || |||||| |||| | |||| |||||| |||| |||||||||||||    
T  26669261 acaatatcaattgttaattaataaattaagagtgaaaattgtatatacatcataataaatcatgagtttgttacaataaca 26669181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 8005056 - 8005127
Alignment:
Q  51 ttataacaaatcacgagtgtgttacaataacaatccttga-ttttctcattttacacttaactcactttaga 121  Q
    ||||||||||||| || | |||||||||||||| |||| | ||||| |||||||| ||| ||||||||||||    
T  8005056 ttataacaaatcatgaatttgttacaataacaacccttaatttttcacattttacgctttactcactttaga 8005127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 44253034 - 44253104
Alignment:
Q  54 taacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 125  Q
    |||||||| |||||| ||||| |||||| | |||||||||| ||| ||||||||| | ||||||||||||||    
T  44253034 taacaaattacgagtttgttaaaataaccacccttgatttt-tcactttacacttcagtcactttagaggat 44253104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 47187702 - 47187649
Alignment:
Q  72 ttacaataacaatccttgattttctcattttacacttaactcactttagaggat 125  Q
    ||||||||||||  ||| ||||||||| ||||||||| |||| |||||||||||    
T  47187702 ttacaataacaactcttaattttctcactttacactttactcgctttagaggat 47187649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 18345814 - 18345696
Alignment:
Q  4 caatatcaattgttaattaacaaattaaatgttaatattgtagatactt-ataacaaatcacgagtgtgttacaataacaatccttgattttctcatttt 102  Q
    |||||||||  ||||||||| |||| ||| ||  ||||||||| ||| | ||||||||||| |||| |||| ||||||||| |||||||||||  | |||    
T  18345814 caatatcaaccgttaattaataaatgaaaagtatatattgtaggtacgtcataacaaatcatgagtttgttgcaataacaacccttgattttcgtacttt 18345715  T
Q  103 acacttaactcactttaga 121  Q
    | |||| ||||||||||||    
T  18345714 atactttactcactttaga 18345696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 11601010 - 11600902
Alignment:
Q  2 gacaatatcaattgttaattaacaaattaaatgttaatattgtagatac-ttataacaaatcacgagtgtgttacaataacaatccttgattttctcatt 100  Q
    |||||||||||| ||||||||||| |||||||||  |||||||| |||| |  |||||  | |||||| |||| | ||||||| | || ||||||||| |    
T  11601010 gacaatatcaatcgttaattaacatattaaatgtatatattgtaaatacatcgtaacaggttacgagtttgttgc-ataacaaccgttaattttctcact 11600912  T
Q  101 ttacacttaa 110  Q
    ||||||||||    
T  11600911 ttacacttaa 11600902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 29391274 - 29391157
Alignment:
Q  4 caatatcaattgttaattaacaaattaaatgttaatattgtagatacttataacaaatcacgagtgtgttacaataacaatccttgattttctcatttta 103  Q
    ||||||||| ||||||||||||||||||| |   ||||||||| |||  || | || | | |||| |||||||||||||| |||  ||||||| | ||||    
T  29391274 caatatcaactgttaattaacaaattaaaggcatatattgtaggtac--atcataatt-atgagtttgttacaataacaaccctcaattttcttacttta 29391178  T
Q  104 cacttaactcactttagagga 124  Q
    ||||| |||||||||||||||    
T  29391177 cactttactcactttagagga 29391157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 23499438 - 23499510
Alignment:
Q  53 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 125  Q
    ||||||||||| |||| ||||| |||||||| |||| ||||||||| ||||||||| |  ||||||| |||||    
T  23499438 ataacaaatcatgagtttgttaaaataacaacccttaattttctcactttacacttcagccactttaaaggat 23499510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 8258948 - 8258825
Alignment:
Q  2 gacaatatcaattgttaattaacaaattaaatgttaatattgtag--atacttataacaaatcacgagtgtgttacaataacaatccttgattttctcat 99  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||  ||| |  ||| |||| | |||  |||||||||||||| | |||| ||||||||    
T  8258948 gacaatataaattgtcaattaacaaattaaatgtagatattgtaggcata-tcgtaaaaaattatgagcttgttacaataacaacctttga-tttctcat 8258851  T
Q  100 tttacacttaactcactttagaggat 125  Q
    ||||| ||| |  |||||||||||||    
T  8258850 tttaccctttatccactttagaggat 8258825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 8272366 - 8272243
Alignment:
Q  2 gacaatatcaattgttaattaacaaattaaatgttaatattgtag--atacttataacaaatcacgagtgtgttacaataacaatccttgattttctcat 99  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||  ||| |  ||| |||| | |||  |||||||||||||| | |||| ||||||||    
T  8272366 gacaatataaattgtcaattaacaaattaaatgtagatattgtaggcata-tcgtaaaaaattatgagcttgttacaataacaacctttga-tttctcat 8272269  T
Q  100 tttacacttaactcactttagaggat 125  Q
    ||||| ||| |  |||||||||||||    
T  8272268 tttaccctttatccactttagaggat 8272243  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 9521880 - 9521948
Alignment:
Q  54 taacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagag 122  Q
    |||||||||| |||| ||||| | | |||| | |||||||||||| ||||||||| | |||||||||||    
T  9521880 taacaaatcatgagtttgttaaattgacaacctttgattttctcactttacactttagtcactttagag 9521948  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 36912811 - 36912767
Alignment:
Q  54 taacaaatcacgagtgtgttacaataacaatccttgattttctca 98  Q
    |||||||||| |||| |||||| ||||||||| ||||||||||||    
T  36912811 taacaaatcatgagtttgttacgataacaatctttgattttctca 36912767  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 1607839 - 1607790
Alignment:
Q  76 aataacaatccttgattttctcattttacacttaactcactttagaggat 125  Q
    |||||||||| |||| ||||||||||||| ||| ||||||||||||||||    
T  1607839 aataacaatcattgaatttctcattttaccctttactcactttagaggat 1607790  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 3143241 - 3143313
Alignment:
Q  53 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacacttaactcactttagaggat 125  Q
    ||||||||||| |||| ||||| ||||||||  |||||| |||||| ||||||  | | ||||||||||||||    
T  3143241 ataacaaatcaggagtttgttaaaataacaacacttgatattctcactttacaaattagtcactttagaggat 3143313  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 7840408 - 7840455
Alignment:
Q  76 aataacaatccttgattttctcattttacacttaactcactttagagga 124  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||||    
T  7840408 aataacaacccttgattttct-actttacacttaactcactttagagga 7840455  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 39421579 - 39421523
Alignment:
Q  53 ataacaaatcacgagtgtgttacaataacaatccttgattttctcattttacactta 109  Q
    ||||||||||| |||| ||||| |||||||| | |||||||||||| ||||||||||    
T  39421579 ataacaaatcatgagtttgttaaaataacaacctttgattttctcactttacactta 39421523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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