View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_4 (Length: 520)
Name: NF15048_low_4
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 1262200 - 1261698
Alignment:
| Q |
1 |
aattatcgatcaatgattgaaaagaaaatcaaaagagaaggggggtaatttcatctatttttaggagaaacactttccttatagatatatatgaatttgg |
100 |
Q |
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| T |
1262200 |
aattatcaatcagtgattgaaaagaaaatcaaaagagaaggggggtaatttcatctatttttaggagaaacactttccttataaatatatatgaatttgg |
1262101 |
T |
|
| Q |
101 |
aaatattcattaccttaatattaccagcaactttgacagcttcaataattttgagttgctccatcacttgaggataagcaaaagtacatatcacaatgtc |
200 |
Q |
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| T |
1262100 |
aaatattcattaccttaatattaccagcaactttgacagcttcaataattttgagttgctccatcacttgaggataagcaaaagtacatatcacaatgtc |
1262001 |
T |
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| Q |
201 |
tacttgtttaataactgccacaatttgattatgctcaagttctccctgcatttattaacttttgagactcattaagaaaatttattctctaacttcatca |
300 |
Q |
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| T |
1262000 |
tgcttgtttaataactgccacaatttgattatgctcaagttctccctgcatttattaatttttgagactaattaagaaaatttattctctaacttcatca |
1261901 |
T |
|
| Q |
301 |
caaagcatttggacaagacttacctccacaagtgttactcctatggaactgaattccttgcaaagttgtatcttggaggtaggtgtttgtgaattaatag |
400 |
Q |
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| T |
1261900 |
caaagcatttggacaagacttacctccacaagtgttactcctatggaactgaattccttgcaaagttgtatcttggaggtaggtgtttgtgaattaatag |
1261801 |
T |
|
| Q |
401 |
gtcgagtatacactaaagttggataacctaaagatatgcttgccttcaccacatactttcctatgtaaccagttccaccaaatacaagaatcctactctt |
500 |
Q |
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| T |
1261800 |
gtcgagtatacaccaaagttggataacctaaagatatgcttgccttcaccatatactttcctatgtaaccagttccaccaaatacaagaatcctactctt |
1261701 |
T |
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| Q |
501 |
att |
503 |
Q |
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| T |
1261700 |
att |
1261698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 315 - 505
Target Start/End: Original strand, 1338684 - 1338874
Alignment:
| Q |
315 |
aagacttacctccacaagtgttactcctatggaactgaattccttgcaaagttgtatcttggaggtaggtgtttgtgaattaataggtcgagtatacact |
414 |
Q |
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| T |
1338684 |
aagacttgcctcaacaagtgttactccaatggaattgaattccttgcaaagttgtatcttggagttaggagtttttgaattaatagggtgagtatacaca |
1338783 |
T |
|
| Q |
415 |
aaagttggataacctaaagatatgcttgccttcaccacatactttcctatgtaaccagttccaccaaatacaagaatcctactcttatttg |
505 |
Q |
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| T |
1338784 |
aaagttggatgacctaatgagatgcttgccttcaccatatactttcctatgtaaccagttccaccaaatacaagaatcttattcttctttg |
1338874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 315 - 495
Target Start/End: Original strand, 1324130 - 1324310
Alignment:
| Q |
315 |
aagacttacctccacaagtgttactcctatggaactgaattccttgcaaagttgtatcttggaggtaggtgtttgtgaattaataggtcgagtatacact |
414 |
Q |
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| T |
1324130 |
aagacttacctccacaagagttgctccaatggaattgaattctttgcaaagttgtatctttgagggagaagtttgtgaattgattgggcgagtatacacc |
1324229 |
T |
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| Q |
415 |
aaagttggataacctaaagatatgcttgccttcaccacatactttcctatgtaaccagttccaccaaatacaagaatccta |
495 |
Q |
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| T |
1324230 |
aaagttggatagcctaaagagatgcttgccttcaccacatactttcctatgtaaccagttccaccaaatacaagaatccta |
1324310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 112 - 250
Target Start/End: Original strand, 1338460 - 1338598
Alignment:
| Q |
112 |
accttaatattaccagcaactttgacagcttcaataattttgagttgctccatcacttgaggataagcaaaagtacatatcacaatgtctacttgtttaa |
211 |
Q |
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| T |
1338460 |
accttgatattgccagcaactttaatagcatctataattttgagttgctccaacacttgtgggtatggaaaggtacatatcacaatgtctacttgcttaa |
1338559 |
T |
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| Q |
212 |
taactgccacaatttgattatgctcaagttctccctgca |
250 |
Q |
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| T |
1338560 |
tcactttcacaatctggtcatgctcaagttctccctgca |
1338598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 250
Target Start/End: Original strand, 1323720 - 1323859
Alignment:
| Q |
111 |
taccttaatattaccagcaactttgacagcttcaataattttgagttgctccatcacttgaggataagcaaaagtacatatcacaatgtctacttgttta |
210 |
Q |
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| T |
1323720 |
taccttgatattaccagcaactttgatagcatctacaattttgagttgctccatcacttgcggatatggaaaggtacatatcacaatgtctgcttctttt |
1323819 |
T |
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| Q |
211 |
ataactgccacaatttgattatgctcaagttctccctgca |
250 |
Q |
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|| ||| ||||| || | ||| |||||||||||||||| |
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| T |
1323820 |
atgactctaacaatctggtcatgttcaagttctccctgca |
1323859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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