View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_5 (Length: 493)
Name: NF15048_low_5
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_5 |
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| [»] scaffold0186 (2 HSPs) |
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Alignment Details
Target: scaffold0186 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 181 - 477
Target Start/End: Original strand, 26288 - 26594
Alignment:
| Q |
181 |
taaagtactatccttttaattgcactatttatggttcttaagatagatgttgacaaagggtgaataagatggatgcaagatagatgttcacattgtaaca |
280 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26288 |
taaagtattacccttttaattgcactatttatggttcttaagatagatgttgacaaagggtgaataagatggatgcaagatagatgtgcacattgtaaca |
26387 |
T |
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| Q |
281 |
actaaatag----------gttaaataaatattgtttctttgtcagcttaccataataatagtcatctatagcgattcatcaccgtctctttgaacttct |
370 |
Q |
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| T |
26388 |
gctaaatagaccatgtttagttaaataaatattgtttctttttcagcttaccataataatagtcagccatagtgattcatcaccgtctctttgaacttct |
26487 |
T |
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| Q |
371 |
aatgaatgttgttttgttcttttatgaacatatcgccgtgaaatttgtctttagcagacttttagaaaaactaaccaaagttgtgattgacttaaccatg |
470 |
Q |
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| T |
26488 |
aatgaatgttgttttgttcttttatggacatatcgccgtaaaatttgtctttaacagacttttaaaaaaactaaccaaatatgtgattgacttaaccatg |
26587 |
T |
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| Q |
471 |
ttttgtc |
477 |
Q |
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||||||| |
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| T |
26588 |
ttttgtc |
26594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 25416 - 25480
Alignment:
| Q |
1 |
catgcgtcacataatgaataccatcaagcataaatc-tgcactcaacttaaaggtcgtgcaagaa |
64 |
Q |
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| T |
25416 |
catgcgttacatattgaataccatcaagcatcaatcctgcactcaacttaaaggtcgtgcaagaa |
25480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 45328577 - 45328518
Alignment:
| Q |
208 |
tttatggttcttaagatagatgttgacaaagggtgaataagatggatgcaagatagatgt |
267 |
Q |
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| T |
45328577 |
tttatggggcttaagagagattttgacagagggtgaataagatggatgtaagatatatgt |
45328518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 17226171 - 17226220
Alignment:
| Q |
237 |
agggtgaataagatggatgcaagatagatgttcacattgtaacaactaaa |
286 |
Q |
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|||||||||| | || |||| |||||||||||||||||||||||||||| |
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| T |
17226171 |
agggtgaatatgttgaatgctggatagatgttcacattgtaacaactaaa |
17226220 |
T |
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