View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15048_low_6 (Length: 490)
Name: NF15048_low_6
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 43017017 - 43016531
Alignment:
| Q |
1 |
aaaaagacatcaactgaacttttatcttgccacgataaataaataggtgttaccacattctcttttaaaaatctaaaaaagttgcttatattaatcattt |
100 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43017017 |
aaaaagacatcaactaaacttttattttgccacgataaataaataggtgttaccacattctcttttaaaaatctaaaaaagttgcttatattaatcattt |
43016918 |
T |
|
| Q |
101 |
tttgagatattttagtactaataaaactttaataatttgactcgcggttaaactttttgagaaagaaatcagtaattttcaattgtttacataaagacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43016917 |
tttgagatattttagtactaataaaactttaataatttgactcacggttaaactttttgagaaagaaatcagtaattttcaattgtttatttaaagacta |
43016818 |
T |
|
| Q |
201 |
attgaaaattattnnnnnnn-cgccaagacaaaattgaaaattactgatttcttcctcaaaaagtataaccgtgagtcaaattattgtgattcataaaaa |
299 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
43016817 |
attgaaaattattaaaaaaaacgccaagacaaaattgaaaattatcgatttcttcctcaaaaagtttaaccgtgagtcaaattattatgattcataaaaa |
43016718 |
T |
|
| Q |
300 |
tactatagactaannnnnnncccacgctatagtttttta--gtagcgatgcaatcgcgatttgaattatgtctcaattgtttacataaagaaaattaaag |
397 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016717 |
tactatagactaattttttgcccccgctatagttttttttcgcagcgatgcaatcgcgacttgaattatgtctcaattgtttacataaagaaaattaaag |
43016618 |
T |
|
| Q |
398 |
agaaacaactacaagaagaatatttaagaagactaaattggaatggatgatgaataatacatacctgaaaattttcattttcttgga |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43016617 |
agaaacaactacaagaagaatatttaagaagactaaattggaatggatgatgaataatacatacctgaaaattttcattttgttgga |
43016531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 43016834 - 43016887
Alignment:
| Q |
232 |
aattgaaaattactgatttcttcctcaaaaagtataaccgtgagtcaaattatt |
285 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
43016834 |
aattgaaaattactgatttctttctcaaaaagtttaaccgtgagtcaaattatt |
43016887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 43016731 - 43016785
Alignment:
| Q |
130 |
taataatttgactcgcggttaaactttttgagaaagaaatcagtaattttcaatt |
184 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
43016731 |
taataatttgactcacggttaaactttttgaggaagaaatcgataattttcaatt |
43016785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University