View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_8 (Length: 398)
Name: NF15048_low_8
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 36313058 - 36312690
Alignment:
| Q |
1 |
gatattattatatagtgtagatttattgtcgtgtgttagtctacgagtaaat-tacgtatttgggatccttgttgacacttagatttttgttgagtcatg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36313058 |
gatattattatatagtgtagatttattgtcgtgtgttagtctacgagtaaatatacgtatttgggatccttgttgacacttagatttttgttgagtcatg |
36312959 |
T |
|
| Q |
100 |
tgtggttggaatgctttcttaatcagttgggtatatctatgtttttgttgctggatgatttcaaatgtgatttttgtttgagaagtcttattatttacaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312958 |
tgtggttggaatgctttcttaatcagttgggtatatctatgtttttgttgctggatgatttcaaatgtgatttttgtttgagaagtcttattatttacaa |
36312859 |
T |
|
| Q |
200 |
attgcaacgattttgttttgagtgtatgtatgatatctccataatcgtataagaatgtttgctactttgcttgctagaaaatccattctagcagtaaaat |
299 |
Q |
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| T |
36312858 |
a-------gattttgttttgagtgtatgtatgatatctccataatcgtataagaatg--------tttgcttgctaaaaaatccattctagcagtaaaat |
36312774 |
T |
|
| Q |
300 |
ttgtatttcatgtgccacaaaaatgcagtaatcaccaacttatttggttgttagctgataaataaataaataaaactgccaact |
383 |
Q |
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| T |
36312773 |
ttgtatttcatgtgccacaaaaatgcagtaatcaccaacttatttggttgttagctgataaataaataaataaaactgtcaact |
36312690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 36320391 - 36320254
Alignment:
| Q |
60 |
ttgggatccttgttgacacttagatttttgttgagtcatgtgtggttggaatgctttcttaatcagttgggtatatctatgtttttgttgctggatgatt |
159 |
Q |
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|||||||||||||||||||| ||||||| ||||| ||||| || ||||| |||||||||| |||| | | |||||||||||||||||||| || ||| |
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| T |
36320391 |
ttgggatccttgttgacactcagattttggttgattcatgggtagttggcatgctttctttatcatgttagactatctatgtttttgttgctgaataatt |
36320292 |
T |
|
| Q |
160 |
tcaaatgtgatttttgtttgagaagtcttattatttac |
197 |
Q |
| |
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|| | ||||||||||||||||||||||||||||||||| |
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| T |
36320291 |
tccattgtgatttttgtttgagaagtcttattatttac |
36320254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 197
Target Start/End: Complemental strand, 36333109 - 36332975
Alignment:
| Q |
63 |
ggatccttgttgacacttagatttttgttgagtcatgtgtggttggaatgctttcttaat-cagttgggtatatctatgtttttgttgctggatgatttc |
161 |
Q |
| |
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|||| |||||| |||| ||||||||||||| ||||| ||| |||| ||||||| ||||| || |||| | ||||||||||||||||| || |||||| | |
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| T |
36333109 |
ggatacttgtttgcactcagatttttgttgattcatgcgtgattggcatgctttgttaattcaattggat-tatctatgtttttgttgttgaatgattac |
36333011 |
T |
|
| Q |
162 |
aaatgtgatttttgtttgagaagtcttattatttac |
197 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
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| T |
36333010 |
aaatgtgatttttatttgagaagtcttattatttac |
36332975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 36325367 - 36325314
Alignment:
| Q |
144 |
ttgttgctggatgatttcaaatgtgatttttgtttgagaagtcttattatttac |
197 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36325367 |
ttgttgctgaataatttcaattgtgatttttgtttgagaagtcttattatttac |
36325314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 343
Target Start/End: Complemental strand, 36320178 - 36320117
Alignment:
| Q |
284 |
attctagcagtaaaatttgtatt-tcat-gtgccacaaaaatgcagtaatcaccaacttatt |
343 |
Q |
| |
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|||| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||| |
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|
| T |
36320178 |
attcgagcagtaaaatttgtattctctttgtgccacaaaaatgcagtaatcaccaacttatt |
36320117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 36335785 - 36335687
Alignment:
| Q |
95 |
tcatgtgtggttggaatgctttcttaatcagttgggtatatctatgtttttgttgctggatgatttcaaatgtgatttttgtttgagaagtcttattatt |
194 |
Q |
| |
|
||||| || ||||| |||||||||| |||||||| || |||||||||||||||| ||| ||||||| | | ||||||||||| |||||||||| ||| |
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| T |
36335785 |
tcatgcgtagttggcatgctttcttgatcagttgtgt-tatctatgtttttgtttctgaatgattttgattatgatttttgtt---gaagtcttatcatt |
36335690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 36335583 - 36335534
Alignment:
| Q |
310 |
tgtgccacaaaaatgcagtaatcaccaacttatttggttgttagctgataa |
360 |
Q |
| |
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|||||||| ||||||||||||||||| |||| |||||||||||||||||| |
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| T |
36335583 |
tgtgccactgaaatgcagtaatcaccagctta-ttggttgttagctgataa |
36335534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 17090265 - 17090375
Alignment:
| Q |
85 |
ttttgttgagtcatgtgtggttggaatgctttcttaatcagttgggtatatctatgtttttgttgctggatgatttcaaatgtgatttttgtttgagaag |
184 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||| || |||||||||| |||||||||||||||||||| |
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| T |
17090265 |
ttttgttgattcatgcgtggttggcatgctttcttaatcagttgggt-tatctatgtttttgtt-ttgaatgatttcaattgtgatttttgtttgagaag |
17090362 |
T |
|
| Q |
185 |
tcttattatttac |
197 |
Q |
| |
|
|||| | |||||| |
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|
| T |
17090363 |
tcttttcatttac |
17090375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 17090463 - 17090541
Alignment:
| Q |
284 |
attctagcagtaaaatttgtatt---tcatgtgccacaaaaatgcagtaatcaccaacttatttggttgttagctgataa |
360 |
Q |
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||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
17090463 |
attctagcagtaaaatttgtactctcttttgtgccacaaaaatgcagtaatcaccaactta-ttggtttttagctgataa |
17090541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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