View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15048_low_9 (Length: 397)
Name: NF15048_low_9
Description: NF15048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15048_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 87 - 381
Target Start/End: Original strand, 44694335 - 44694631
Alignment:
| Q |
87 |
ctatatcctagttttcgaaacaagatgcgtcaatctttgctatgtaattattaatgt--tgcaaaatgaaataactggtatatttttgttttgacaagaa |
184 |
Q |
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| T |
44694335 |
ctatatcctagttttcgaaacaagatgcgtcaatctttgctatgtaattattaattaactgcaaaatgaaataactggtatatttttgttttgacaagaa |
44694434 |
T |
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| Q |
185 |
atatgctaaaatgatgaaattttgtcagacgtgtgtactcgatccctatcaagtatcaatgaatggtctatgccccgtgcaataaaccctaaaatatcct |
284 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694435 |
atatgctaaaatgatgaaattttgtcagacatgtgtactcgatccccatcaagtatcaatgaatggtctatgccccgtgcaataaaccctaaaatatcct |
44694534 |
T |
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| Q |
285 |
ataaattaacctaccaatgcatggcaacagggatatcatgtcatactcatcattatgattattcacatggagcaataaagatgcatgacatatgttt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44694535 |
ataaattaacctaccaatgcatggcaacagggatatcatgtcatactcatcattatgattattcacatggagtaataaagatgcatgacatatgttt |
44694631 |
T |
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