View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15049_high_3 (Length: 368)
Name: NF15049_high_3
Description: NF15049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15049_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 24937023 - 24937367
Alignment:
| Q |
1 |
gggtagagacaaaaacgagtcccaaaatagcataaccatatctatctatagctagggtaatgggaaacatattattatattataggatcataaaaagata |
100 |
Q |
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| T |
24937023 |
gggtagagacaaaaacgagtcccaaaatagcataaccatatctatctatagctagggtaatgggaaacatattattatattataggatcataaaaagata |
24937122 |
T |
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| Q |
101 |
ttccattttagattcttataaattgagcttcatgcaaaatgtaacgttggaagaatccatctgcatggtgctcggattcatgcatattacagtgggtttt |
200 |
Q |
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| T |
24937123 |
ttccattttagattcttataaattgagcttcatgcaaaaggtaacgtttgaagaatccatctgcatgctgctcggattcatgcatattacagtgggtttt |
24937222 |
T |
|
| Q |
201 |
tagactttagaatgagacacacaaataattacatcgtacaacttttcacataacataaaataaaatgaaagcataacatgcagtttgttaatcttggatt |
300 |
Q |
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| T |
24937223 |
tagactttagaataagacacacaaataattacatcgtacaacttttcacataacataaaataaaatgaaagcataacatgcggtttgttaatcttggatt |
24937322 |
T |
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| Q |
301 |
aatggattatacttttgaagatacgaatcaatgcattatatatat |
345 |
Q |
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| T |
24937323 |
aatggattatacttttgaagatacgaatcaatgcattatatatat |
24937367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 24939709 - 24939791
Alignment:
| Q |
84 |
aggatcataaaaagatattccattttagattcttataaattgagcttcatgcaaaatgtaacgttggaagaatccatctgcatg |
167 |
Q |
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| T |
24939709 |
aggatcataagaagatattccattttagatcctaa-agtttcagcttcattctaaatgtaacgtttgaagaatccgtctgcatg |
24939791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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