View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15049_low_1 (Length: 720)
Name: NF15049_low_1
Description: NF15049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15049_low_1 |
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| [»] scaffold0035 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 13 - 704
Target Start/End: Original strand, 5823266 - 5823957
Alignment:
| Q |
13 |
aatattgaaacctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823266 |
aatattgaaacctgaccctgaacaagcaaatttcataacaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaag |
5823365 |
T |
|
| Q |
113 |
taccttgaggttattgtcactggtgctatggctcagtacattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
5823366 |
taccttgaggttattgtcactggtgctatggctcagtacattcctacccttgattattatagtggtaacctaccaaaaccatgtacaatatatgcttcat |
5823465 |
T |
|
| Q |
213 |
ctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccact |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823466 |
ctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccact |
5823565 |
T |
|
| Q |
313 |
tgacgagtcacctccaaaactagtagtccttgttgatgtggaaattggtaaattttacgaatttattataattacttattctggtctttgtcgctacaaa |
412 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
5823566 |
tgacgagtcacctccaaaactagtagaccttgttgatgtggaaattggtaaattttacgaatttattataactacttattctggtctttgtcgttacaaa |
5823665 |
T |
|
| Q |
413 |
gttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgatatggataaaa |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||| |
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| T |
5823666 |
gttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaacgtgctgttgagtatcgattcggataaaa |
5823765 |
T |
|
| Q |
513 |
cagacgaatcagagcttcaaaaagcaattgaaaatgcttctgagttgttgaaaaagttcaacacaagcattgttgagtataccagttttgcagataccaa |
612 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||| |||| ||||| || ||||||| ||||| ||||||| || || |||||||| || || || |
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| T |
5823766 |
cagacgaatcggagcttcaaaaagctattgaaaatgcgtctgcattgttaaaggagttcaaaacaagtgttgttgaatacactagttttgctgaaacaaa |
5823865 |
T |
|
| Q |
613 |
atcaattcctggacattatgtgatttattgggaacttttgatgaagggttcatctcatcctccaacaaatgaagtattgaatcaatgttgtt |
704 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||| |||||||||||||||| |
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| T |
5823866 |
atcaattcctggacattatgttatttattgggagcttttgatgaaggattcctcttgtcctccaactgatgaagtgttgaatcaatgttgtt |
5823957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 50 - 311
Target Start/End: Complemental strand, 5832763 - 5832502
Alignment:
| Q |
50 |
acaaaagaatgttctggagaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagt |
149 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
5832763 |
acaaaagaatgttcaggagacaattgggaacgtataatcccaagaatctggcctaacacaaagtatcttgaagttattgtcactggtgctatggctcagt |
5832664 |
T |
|
| Q |
150 |
acattccaacccttgattattacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaaccttaagcctatgac |
249 |
Q |
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||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
5832663 |
acattcctacccttgattattacagtggtaaccttccaaaaccatgtacaatgtatgcttcatctgaatgttattttggtcttaaccttaagcctatgac |
5832564 |
T |
|
| Q |
250 |
agaacctaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccac |
311 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5832563 |
agaaccaaatgaagtttcttacaccattatgccaaacatgggttactttgaatttttaccac |
5832502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 320 - 704
Target Start/End: Complemental strand, 5832466 - 5832082
Alignment:
| Q |
320 |
tcacctccaaaactagtagtccttgttgatgtggaaattggtaaattttacgaatttattataattacttattctggtctttgtcgctacaaagttggtg |
419 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||| |||||||||||||||| || || | || | |||||||| ||| |||| || |||| |||||||| |
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| T |
5832466 |
tcacctccaaagctagtagaccttgctgatgtccaaattggtaaattttatgagcttgtaatcacaacttattccggtttttgccgttacagagttggtg |
5832367 |
T |
|
| Q |
420 |
atattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgatatggataaaacagacga |
519 |
Q |
| |
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||||||||||||| | ||||||||||| || |||| || ||||| || || ||||||||||| |||||||||||||| ||| ||||||||||||||| |
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| T |
5832366 |
atattcttcaagtcaatggattccataattctgatcctcagttcaaattcgtgaggcgaaagaacgtgttgttgagtatcgattcggataaaacagacga |
5832267 |
T |
|
| Q |
520 |
atcagagcttcaaaaagcaattgaaaatgcttctgagttgttgaaaaagttcaacacaagcattgttgagtataccagttttgcagataccaaatcaatt |
619 |
Q |
| |
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||| |||||||||||||| ||||||||||| |||| ||||| || ||||||| ||||| ||||||| || || |||||||| || || ||||||||| |
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| T |
5832266 |
atcggagcttcaaaaagctattgaaaatgcgtctgcattgttaaaggagttcaaaacaagtgttgttgaatacactagttttgctgaaacaaaatcaatt |
5832167 |
T |
|
| Q |
620 |
cctggacattatgtgatttattgggaacttttgatgaagggttcatctcatcctccaacaaatgaagtattgaatcaatgttgtt |
704 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||| |||||||||||||||| |
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| T |
5832166 |
cctggacattatgttatttattgggagcttttgatgaaggattcctcttgtcctccaactgatgaagtgttgaatcaatgttgtt |
5832082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 68 - 303
Target Start/End: Original strand, 78088 - 78323
Alignment:
| Q |
68 |
gaaaattgggaacgtataatcccaagaatttggcctaacacaaagtaccttgaggttattgtcactggtgctatggctcagtacattccaacccttgatt |
167 |
Q |
| |
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|||||||||||| | |||||| || |||||||||||||| || || | || || ||||| ||||||||||||||||| ||||||||||| ||| ||| |
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| T |
78088 |
gaaaattgggaaggaataatcataaagatttggcctaacaccaaatatttagatgtcattgtaactggtgctatggctcaatacattccaacacttaatt |
78187 |
T |
|
| Q |
168 |
attacagtggtaacctaccaaagccatgtacaatatatgcttcatctgaatgctattttggacttaaccttaagcctatgacagaacctaatgaagtttc |
267 |
Q |
| |
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| ||||||||| |||| ||||||| || |||||||| || |||||||| ||||||||||||||||| || ||| |||| ||| ||||| |
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| T |
78188 |
actacagtggtgggttacctctttcatgtactatgtatgcttcctcagaatgctactttggacttaaccttaatccaatgtgcaaaccatctgaggtttc |
78287 |
T |
|
| Q |
268 |
ttacaccattatgccaaacatgggttactttgaatt |
303 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||| |
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| T |
78288 |
atacaccatcatgccaaacatggcctactttgaatt |
78323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 537
Target Start/End: Original strand, 78463 - 78557
Alignment:
| Q |
443 |
cataactcaaatccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgatatggataaaacagacgaatcagagcttcaaaaagc |
537 |
Q |
| |
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|||||||||| ||||||||| | ||||| | ||||||||||||||| | ||||||||| |||||||||||| || |||||||| |||||||| |
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| T |
78463 |
cataactcaacaccacaattccattttgtgcgtcgaaagaatgtgttgcttagtattgattcggataaaacagatgagtcagagctacaaaaagc |
78557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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