View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15049_low_2 (Length: 537)

Name: NF15049_low_2
Description: NF15049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15049_low_2
NF15049_low_2
[»] scaffold0174 (1 HSPs)
scaffold0174 (203-406)||(24441-24648)
[»] chr2 (4 HSPs)
chr2 (4-104)||(21255157-21255257)
chr2 (8-58)||(20984505-20984555)
chr2 (410-466)||(12127459-12127515)
chr2 (334-398)||(27846231-27846295)
[»] chr6 (4 HSPs)
chr6 (408-467)||(33597099-33597158)
chr6 (343-406)||(12449306-12449369)
chr6 (287-405)||(17379227-17379344)
chr6 (358-404)||(21863412-21863458)
[»] chr5 (1 HSPs)
chr5 (195-371)||(26994186-26994362)
[»] chr3 (3 HSPs)
chr3 (408-462)||(8122709-8122763)
chr3 (413-467)||(17143549-17143603)
chr3 (423-467)||(20622644-20622688)
[»] chr7 (4 HSPs)
chr7 (423-467)||(26762721-26762765)
chr7 (424-467)||(16986904-16986947)
chr7 (208-237)||(10287101-10287130)
chr7 (348-405)||(13159666-13159722)
[»] chr8 (2 HSPs)
chr8 (410-454)||(5860065-5860109)
chr8 (423-467)||(21416962-21417006)
[»] chr1 (1 HSPs)
chr1 (423-466)||(26977986-26978029)
[»] chr4 (2 HSPs)
chr4 (424-462)||(47253519-47253557)
chr4 (423-467)||(17218790-17218834)
[»] scaffold0092 (1 HSPs)
scaffold0092 (204-236)||(21117-21149)


Alignment Details
Target: scaffold0174 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 203 - 406
Target Start/End: Original strand, 24441 - 24648
Alignment:
Q  203 cgaagcattaaatgccaactgctcccactaactcgcacgagcaccacctccttgaagacggattcaacttcccctaaatgaaaaacttcc-----aaggc 297  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
T  24441 cgaagcattaaaagccaactgctcccactaactcgcacgagcaccacctccttgaagacggattcaacttcccctaaatgaaaaacttccaggctaaggc 24540  T
Q  298 accaacaattgcgggcacccgatcatacgcctctctttacaactaaaagtcattgcgccttaaaggcatcaacaacttgaggggaaactgttatggaccg 397  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||  | |||||||    
T  24541 accaacgattgcgggcacccgatcatacgcctctctttacaactaaaagtcattgcgccttaaa-gcatcaacgacttggggggcaactaatctggaccg 24639  T
Q  398 gtcagaaga 406  Q
    | |||||||    
T  24640 gccagaaga 24648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 21255257 - 21255157
Alignment:
Q  4 gagaatggaaaaaccacgttacaaaataagcacttacacaatgccaatttttaaatccttgtatgcaactatctaacgaaaatgtttgtatctgcataac 103  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||  ||||||    
T  21255257 gagaatggaaaagccatgttacaaaataagcacttaaacaatgccaatatttaaaaccttgtatgtaactatctaatgaaaatgtttgtatccacataac 21255158  T
Q  104 a 104  Q
    |    
T  21255157 a 21255157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 20984505 - 20984555
Alignment:
Q  8 atggaaaaaccacgttacaaaataagcacttacacaatgccaatttttaaa 58  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20984505 atggaaaaaccacgttacaaaataagcacttacacaatgccaatatttaaa 20984555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 12127459 - 12127515
Alignment:
Q  410 ttgacacatgacttaacttacaccgccttaaggctccgcgtctgagggaacacgcca 466  Q
    ||||||| |||| |||||||||| || |||||||||||| ||||| |||||||||||    
T  12127459 ttgacacgtgacctaacttacactgcattaaggctccgcatctgaaggaacacgcca 12127515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 27846231 - 27846295
Alignment:
Q  334 ttacaactaaaagtcattgcgccttaaaggcatcaacaacttgaggggaaactgttatggaccgg 398  Q
    ||||||||||||| ||||  ||||||||| ||||||| ||||| |||| ||||||| ||||||||    
T  27846231 ttacaactaaaagccattatgccttaaagacatcaacgacttggggggcaactgttctggaccgg 27846295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 33597158 - 33597099
Alignment:
Q  408 cattgacacatgacttaacttacaccgccttaaggctccgcgtctgagggaacacgccaa 467  Q
    ||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  33597158 cattgacacgtgacataacttacaccaccttaaggctccgcgcctgagggaacacgccaa 33597099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 406
Target Start/End: Original strand, 12449306 - 12449369
Alignment:
Q  343 aaagtcattgcgccttaaaggcatcaacaacttgaggggaaactgttatggaccggtcagaaga 406  Q
    |||| ||||||||| |||| |||||||||||||| |||||||||||| | || |||||||||||    
T  12449306 aaagccattgcgccataaatgcatcaacaacttggggggaaactgttcttgatcggtcagaaga 12449369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 405
Target Start/End: Complemental strand, 17379344 - 17379227
Alignment:
Q  287 acttccaaggcaccaacaattgcgggcacccgatcatacgcctctctttacaactaaaagtcattgcgccttaaaggcatcaacaacttgaggggaaact 386  Q
    ||||| ||||| |||||  |||| ||| ||||||||| | |||||| ||| | ||||||||  ||||||||||||| ||| ||| ||||| |||||||||    
T  17379344 acttcgaaggctccaacgtttgcaggcgcccgatcatgcacctctccttatagctaaaagttgttgcgccttaaagtcatgaacgacttg-ggggaaact 17379246  T
Q  387 gttatggaccggtcagaag 405  Q
     || |||||| || |||||    
T  17379245 attttggacctgttagaag 17379227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 21863412 - 21863458
Alignment:
Q  358 taaaggcatcaacaacttgaggggaaactgttatggaccggtcagaa 404  Q
    |||||||||||||| |||| || ||||||||| ||||||||||||||    
T  21863412 taaaggcatcaacagcttggggagaaactgttctggaccggtcagaa 21863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 371
Target Start/End: Original strand, 26994186 - 26994362
Alignment:
Q  195 tttcaattcgaagcattaaatgccaactgctcccactaactcgca-cgagcaccacctccttgaagacggattcaacttcccctaaatgaaaaacttcca 293  Q
    ||||| || ||||||||||||||||||||||||||||||||||||  | || ||||||||| || || |||   |||||| |  ||||| |||||| |      
T  26994186 tttcagtttgaagcattaaatgccaactgctcccactaactcgcatggggcgccacctcctcgaggaagga-aaaacttctcgcaaatgtaaaactacag 26994284  T
Q  294 aggcaccaacaattgcgggcacccgatcatacgcctctctttacaactaaaagtcattgcgccttaaaggcatcaaca 371  Q
    |||| ||||||  ||  ||| || |||| || ||||||||| ||| ||||||| |||||||||||||| |||||||||    
T  26994285 aggcgccaacatgtgaaggcgcctgatcgtatgcctctcttcacagctaaaagccattgcgccttaaatgcatcaaca 26994362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 8122709 - 8122763
Alignment:
Q  408 cattgacacatgacttaacttacaccgccttaaggctccgcgtctgagggaacac 462  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||| |||||||    
T  8122709 cattgacacatgatctaacttacaccgccttaaggctccacgtctgaaggaacac 8122763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 17143549 - 17143603
Alignment:
Q  413 acacatgacttaacttacaccgccttaaggctccgcgtctgagggaacacgccaa 467  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||    
T  17143549 acacgtgacataacttacaccgccttaaggctctgcgtctgagggaacacaccaa 17143603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 20622688 - 20622644
Alignment:
Q  423 taacttacaccgccttaaggctccgcgtctgagggaacacgccaa 467  Q
    ||||||||||||| ||||||||||||| |||||| | ||||||||    
T  20622688 taacttacaccgctttaaggctccgcgcctgaggtagcacgccaa 20622644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 467
Target Start/End: Original strand, 26762721 - 26762765
Alignment:
Q  423 taacttacaccgccttaaggctccgcgtctgagggaacacgccaa 467  Q
    ||||||||||||||||||||||| || ||||||||||||||||||    
T  26762721 taacttacaccgccttaaggctcagcctctgagggaacacgccaa 26762765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 467
Target Start/End: Original strand, 16986904 - 16986947
Alignment:
Q  424 aacttacaccgccttaaggctccgcgtctgagggaacacgccaa 467  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||    
T  16986904 aacttgcaccgccttaaggctccgcgtctgaaggagcacgccaa 16986947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 10287101 - 10287130
Alignment:
Q  208 cattaaatgccaactgctcccactaactcg 237  Q
    ||||||||||||||||||||||||||||||    
T  10287101 cattaaatgccaactgctcccactaactcg 10287130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 13159722 - 13159666
Alignment:
Q  348 cattgcgccttaaaggcatcaacaacttgaggggaaactgttatggaccggtcagaag 405  Q
    ||||||||| |||||||||||| |||||| |||| ||||||| |||||||| ||||||    
T  13159722 cattgcgccataaaggcatcaataacttg-ggggcaactgttctggaccggccagaag 13159666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 5860109 - 5860065
Alignment:
Q  410 ttgacacatgacttaacttacaccgccttaaggctccgcgtctga 454  Q
    |||||||||| | |||||||||||||||||| |||||||||||||    
T  5860109 ttgacacatgtcctaacttacaccgccttaaagctccgcgtctga 5860065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 21417006 - 21416962
Alignment:
Q  423 taacttacaccgccttaaggctccgcgtctgagggaacacgccaa 467  Q
    |||||| |||||||||||||||||| | |||||||||||| ||||    
T  21417006 taacttgcaccgccttaaggctccgtgcctgagggaacacaccaa 21416962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 466
Target Start/End: Complemental strand, 26978029 - 26977986
Alignment:
Q  423 taacttacaccgccttaaggctccgcgtctgagggaacacgcca 466  Q
    |||||||||||||||||||||| |||| |||||| |||||||||    
T  26978029 taacttacaccgccttaaggcttcgcgcctgaggaaacacgcca 26977986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 462
Target Start/End: Complemental strand, 47253557 - 47253519
Alignment:
Q  424 aacttacaccgccttaaggctccgcgtctgagggaacac 462  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  47253557 aacttgcaccgccttaaggctccgcgtctgaaggaacac 47253519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 17218834 - 17218790
Alignment:
Q  423 taacttacaccgccttaaggctccgcgtctgagggaacacgccaa 467  Q
    ||||||||| || |||||||||||| ||||||||| |||||||||    
T  17218834 taacttacatcgtcttaaggctccgtgtctgaggggacacgccaa 17218790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 21117 - 21149
Alignment:
Q  204 gaagcattaaatgccaactgctcccactaactc 236  Q
    ||||||||||||||||||| |||||||||||||    
T  21117 gaagcattaaatgccaactactcccactaactc 21149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University