View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15049_low_3 (Length: 378)
Name: NF15049_low_3
Description: NF15049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15049_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 51930091 - 51930342
Alignment:
| Q |
21 |
gagccaatagtagttatcgatcctcacatcatggaaaagctccattttgtgctcaaccttcttcgccaccggaggaggaagcggagattgagactgcggc |
120 |
Q |
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| T |
51930091 |
gagccaatagtagttatcgatcctcacatcattgaaaagctccattttgtgctcaaccttcttcgccaccggaggaggaagcggagattgagaatgcggc |
51930190 |
T |
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| Q |
121 |
gacagaga------ttgtggaggtgaagtcgtcatcggacggcggtggtgatgagagaacgcggcggtggtggaaaaaggaagagaaagagtgaggacgg |
214 |
Q |
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| T |
51930191 |
gacagagattgagattgtggaggtgaagtcgtcatcggacggcggtggtgatgagagaacgcggcggtggtggaaaaaggaagagaaagagtgaggacgg |
51930290 |
T |
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| Q |
215 |
aaacagttagaggaatgcagcagaataatcgactaatgtttaagcgaacaag |
266 |
Q |
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| T |
51930291 |
aaacagttagaggaatgcagcagaataatcgactaatgtttaagcgaacaag |
51930342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 352
Target Start/End: Original strand, 51930393 - 51930427
Alignment:
| Q |
318 |
gaaaacagtctactccactccactcactcactcac |
352 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
51930393 |
gaaaacagtctactccactccactcactcactcac |
51930427 |
T |
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