View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15049_low_5 (Length: 261)
Name: NF15049_low_5
Description: NF15049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15049_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 43531342 - 43531592
Alignment:
| Q |
1 |
ctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaaagaacttgtgtgattctcaaccagcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43531342 |
ctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaaagaacttgtgtgattctcaaccagcta |
43531441 |
T |
|
| Q |
101 |
aaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctccccactgtcttttacgtgaacgaaccttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43531442 |
aaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctccccattgtcttttacgtgaacgaaccttag |
43531541 |
T |
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| Q |
201 |
acttcacttcttcatcaagtggaattggaaccattagctttttcttctctg |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43531542 |
acttcacttcttcatcaagtggaattggaaccattagctttttcttctctg |
43531592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 24128353 - 24128170
Alignment:
| Q |
1 |
ctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaaagaacttgtgtgattctcaaccagcta |
100 |
Q |
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||||||||| ||| | |||||||| ||||||| ||||||||||| |||||||| | ||||| |||||||| | ||||||||||||||| ||||||||| |
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| T |
24128353 |
ctgatcttgcagatcttttgggttcttagcatcggattgccaccagagtaatcctaagatgattgcagtggataaaacttgtgtgattcttaaccagcta |
24128254 |
T |
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| Q |
101 |
aaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctccccactgtctttta |
184 |
Q |
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||||||||||| |||| ||| |||| |||||| |||| | ||| ||||||||||| ||| ||||||||||| ||||||||| |
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| T |
24128253 |
aaatagtcatgcctcctttccttgattcctctccaaaaaagtatggaaaattgttcatcccatcttgctccccattgtctttta |
24128170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 24146118 - 24145936
Alignment:
| Q |
1 |
ctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaaagaacttgtgtgattctcaaccagcta |
100 |
Q |
| |
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||||||||| ||| | |||||||| |||||||||||||||||| ||| |||| | ||||| |||||||| | ||||||||||||||| ||||||||| |
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| T |
24146118 |
ctgatcttgcagatcttttgggttttcagcatctgattgccaccagagtgatcctaagatgattgcagtggataaaacttgtgtgattcttaaccagcta |
24146019 |
T |
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| Q |
101 |
aaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctccccactgtctttt |
183 |
Q |
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|| |||||||| ||| ||| |||| ||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
24146018 |
aagtagtcatgcttcctttccttgattcctctgcaaaaaagtatggaaaattgttcatcccaacttgctccccattgtctttt |
24145936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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