View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15049_low_6 (Length: 231)

Name: NF15049_low_6
Description: NF15049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15049_low_6
NF15049_low_6
[»] chr2 (13 HSPs)
chr2 (1-216)||(8412470-8412685)
chr2 (1-216)||(8434568-8434783)
chr2 (1-214)||(8394766-8394979)
chr2 (1-211)||(8406350-8406560)
chr2 (1-211)||(8395012-8395222)
chr2 (1-214)||(8431498-8431706)
chr2 (56-192)||(8417746-8417882)
chr2 (56-192)||(8375339-8375475)
chr2 (56-192)||(8439628-8439764)
chr2 (80-199)||(8368812-8368931)
chr2 (80-199)||(8400479-8400598)
chr2 (80-199)||(8422056-8422175)
chr2 (63-197)||(8404470-8404604)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 8412470 - 8412685
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412470 agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 8412569  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412570 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 8412669  T
Q  201 ctgtagcattagaaat 216  Q
    ||||||||||||||||    
T  8412670 ctgtagcattagaaat 8412685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 8434568 - 8434783
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434568 agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 8434667  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434668 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 8434767  T
Q  201 ctgtagcattagaaat 216  Q
    ||||||||||||||||    
T  8434768 ctgtagcattagaaat 8434783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8394979 - 8394766
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394979 agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 8394880  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394879 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 8394780  T
Q  201 ctgtagcattagaa 214  Q
    ||||||||||||||    
T  8394779 ctgtagcattagaa 8394766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 8406350 - 8406560
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406350 agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 8406449  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406450 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 8406549  T
Q  201 ctgtagcatta 211  Q
    |||||||||||    
T  8406550 ctgtagcatta 8406560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 8395222 - 8395012
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  8395222 agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtgagagtaatcatttttatt 8395123  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8395122 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 8395023  T
Q  201 ctgtagcatta 211  Q
    |||||||||||    
T  8395022 ctgtagcatta 8395012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 8431498 - 8431706
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    |||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||| ||||||    
T  8431498 agcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagctgcaacaccagacatagtcttagcagtgagagtaatcatgtttatt 8431597  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||| || ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| || ||||  ||||||||||    
T  8431598 gagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgatgcatttctattctgtctgatacagcttctaaaactg--tagagttgaa 8431692  T
Q  201 ctgtagcattagaa 214  Q
     ||| || ||||||    
T  8431693 ttgtggctttagaa 8431706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 8417746 - 8417882
Alignment:
Q  56 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 155  Q
    |||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | ||||| ||||||||| |||| | ||||||||||||||    
T  8417746 gcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgca 8417845  T
Q  156 tttctattctgtctgatacagcttccaagactgcata 192  Q
    |||| |||||||| || ||| ||||||||||||||||    
T  8417846 tttcaattctgtcagaaacaacttccaagactgcata 8417882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 8375475 - 8375339
Alignment:
Q  56 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 155  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| |||||||    
T  8375475 gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgca 8375376  T
Q  156 tttctattctgtctgatacagcttccaagactgcata 192  Q
    |||| | ||| || || || |||||||||| ||||||    
T  8375375 tttcaactctatcagaaactgcttccaagattgcata 8375339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 8439628 - 8439764
Alignment:
Q  56 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 155  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| |||||||    
T  8439628 gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgca 8439727  T
Q  156 tttctattctgtctgatacagcttccaagactgcata 192  Q
    |||| | ||| || || || |||||||||| ||||||    
T  8439728 tttcaactctatcagaaactgcttccaagattgcata 8439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 8368812 - 8368931
Alignment:
Q  80 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 179  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8368812 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8368911  T
Q  180 ccaagactgcatagagttga 199  Q
    | |  | |||||||||||||    
T  8368912 caagaattgcatagagttga 8368931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 8400598 - 8400479
Alignment:
Q  80 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 179  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8400598 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8400499  T
Q  180 ccaagactgcatagagttga 199  Q
    | |  | |||||||||||||    
T  8400498 caagaattgcatagagttga 8400479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 8422175 - 8422056
Alignment:
Q  80 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 179  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8422175 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8422076  T
Q  180 ccaagactgcatagagttga 199  Q
    | |  | |||||||||||||    
T  8422075 caagaattgcatagagttga 8422056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 8404470 - 8404604
Alignment:
Q  63 cagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctat 162  Q
    ||||||| |||| ||| ||||| || ||||| || || |||||||||| |||  | ||||| |||| ||||||||  || | ||| | ||||||||| ||    
T  8404470 cagacattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaat 8404569  T
Q  163 tctgtctgatacagcttccaagactgcatagagtt 197  Q
    ||||||||||||||| ||| | | |||||||||||    
T  8404570 tctgtctgatacagcctccgaaattgcatagagtt 8404604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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