View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504R-Insertion-10 (Length: 736)

Name: NF1504R-Insertion-10
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504R-Insertion-10
NF1504R-Insertion-10
[»] chr5 (18 HSPs)
chr5 (403-609)||(38817320-38817531)
chr5 (12-339)||(38816931-38817256)
chr5 (35-115)||(38822535-38822615)
chr5 (264-338)||(38822791-38822865)
chr5 (606-688)||(8539576-8539658)
chr5 (633-726)||(204464-204556)
chr5 (633-693)||(13563625-13563685)
chr5 (610-686)||(35281774-35281850)
chr5 (610-688)||(13838484-13838562)
chr5 (668-724)||(4433113-4433167)
chr5 (615-688)||(11348535-11348608)
chr5 (638-724)||(17047556-17047641)
chr5 (634-681)||(40624982-40625029)
chr5 (634-688)||(30192451-30192505)
chr5 (634-688)||(35672065-35672119)
chr5 (615-688)||(18512171-18512244)
chr5 (615-688)||(18512712-18512784)
chr5 (635-688)||(20509314-20509367)
[»] chr4 (14 HSPs)
chr4 (615-726)||(41881864-41881973)
chr4 (610-688)||(29306495-29306573)
chr4 (633-688)||(18884564-18884619)
chr4 (633-688)||(20208468-20208523)
chr4 (621-686)||(37295209-37295274)
chr4 (633-685)||(18411212-18411264)
chr4 (652-724)||(47153393-47153465)
chr4 (633-685)||(48807449-48807501)
chr4 (633-688)||(6790222-6790277)
chr4 (633-684)||(6790984-6791035)
chr4 (653-688)||(14201587-14201622)
chr4 (653-688)||(21022948-21022983)
chr4 (633-687)||(50023608-50023662)
chr4 (633-687)||(50030726-50030780)
[»] chr7 (16 HSPs)
chr7 (669-725)||(121779-121833)
chr7 (633-688)||(34139729-34139784)
chr7 (634-688)||(14101407-14101461)
chr7 (634-688)||(14411424-14411478)
chr7 (656-724)||(40810513-40810580)
chr7 (615-688)||(14102408-14102481)
chr7 (615-688)||(14412425-14412498)
chr7 (603-688)||(38084807-38084892)
chr7 (633-688)||(7974897-7974952)
chr7 (648-725)||(8177716-8177792)
chr7 (653-688)||(12210650-12210685)
chr7 (637-688)||(18220016-18220067)
chr7 (637-688)||(38266161-38266212)
chr7 (637-687)||(19072399-19072449)
chr7 (653-686)||(45258066-45258099)
chr7 (653-686)||(49141680-49141713)
[»] scaffold0176 (1 HSPs)
scaffold0176 (633-688)||(654-709)
[»] chr3 (13 HSPs)
chr3 (633-688)||(13743251-13743306)
chr3 (639-688)||(4274050-4274099)
chr3 (633-688)||(4330750-4330805)
chr3 (621-688)||(10492930-10492997)
chr3 (633-688)||(19842462-19842517)
chr3 (653-688)||(19988437-19988472)
chr3 (637-687)||(34712194-34712245)
chr3 (653-688)||(50998740-50998775)
chr3 (635-685)||(34648267-34648317)
chr3 (637-686)||(34712821-34712871)
chr3 (633-687)||(51755628-51755682)
chr3 (637-686)||(4275012-4275061)
chr3 (639-684)||(24703479-24703524)
[»] chr8 (13 HSPs)
chr8 (634-688)||(12207265-12207319)
chr8 (634-688)||(12451693-12451747)
chr8 (634-687)||(13782194-13782247)
chr8 (616-688)||(38331097-38331169)
chr8 (633-688)||(39277521-39277576)
chr8 (615-688)||(28694018-28694091)
chr8 (635-688)||(34798868-34798921)
chr8 (633-685)||(38134175-38134227)
chr8 (633-684)||(39513251-39513302)
chr8 (653-688)||(44933837-44933872)
chr8 (635-688)||(25994409-25994462)
chr8 (615-684)||(34891950-34892019)
chr8 (635-688)||(36344966-36345019)
[»] chr2 (18 HSPs)
chr2 (610-688)||(30801978-30802056)
chr2 (615-686)||(14002459-14002530)
chr2 (633-682)||(31568648-31568697)
chr2 (637-688)||(2983361-2983413)
chr2 (633-688)||(4286052-4286107)
chr2 (634-685)||(12252545-12252596)
chr2 (653-688)||(29074063-29074098)
chr2 (653-688)||(29947745-29947780)
chr2 (633-684)||(33222574-33222625)
chr2 (633-688)||(40156357-40156412)
chr2 (610-688)||(3086123-3086201)
chr2 (634-688)||(4286761-4286815)
chr2 (634-688)||(37322171-37322224)
chr2 (634-684)||(39033582-39033632)
chr2 (634-688)||(40221190-40221244)
chr2 (633-685)||(3795294-3795347)
chr2 (635-688)||(12252082-12252135)
chr2 (633-686)||(24541694-24541747)
[»] chr1 (9 HSPs)
chr1 (610-688)||(44470071-44470149)
chr1 (634-688)||(50036806-50036860)
chr1 (621-688)||(47653764-47653831)
chr1 (633-687)||(13761105-13761159)
chr1 (636-688)||(19915375-19915427)
chr1 (633-688)||(41459271-41459326)
chr1 (633-687)||(29356733-29356787)
chr1 (610-688)||(49429195-49429273)
chr1 (610-688)||(49660761-49660839)
[»] chr6 (2 HSPs)
chr6 (610-684)||(6759983-6760057)
chr6 (635-688)||(456101-456154)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 403 - 609
Target Start/End: Original strand, 38817320 - 38817531
Alignment:
Q  403 ttttggaatcggtaatccaacgcgaaattgacaagctctcaacattgcttcttctgcttt-gctttggatgaatccaatacaacgcagagacggcacaga 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38817320 ttttggaatcggtaatccaacgcgaaattgacaagctctcaacattgcttcttctgcttttgctttggatgaatccaatacaacgcagagacggcacaga 38817419  T
Q  502 aatg----acaacgattctgctagttacacccctctcacatatattattcccaaaatacccctcgtcgaaaataattttcttttttgagtagtgacatta 597  Q
    ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38817420 aatgaatgacaacgattctgctagttacacccctctcacatatattattcccaaaatacccctcgtcgaaaataattttcttttttgagtagtgacatta 38817519  T
Q  598 atctctttattc 609  Q
    ||||||||||||    
T  38817520 atctctttattc 38817531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 38816931 - 38817256
Alignment:
Q  12 tgaagatcaaccaatagttttgggtcatcttctttcaccaacaaatgctgcaccaataattccctttctcctccaccttcaacagcactacctccagtac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||    
T  38816931 tgaagatcaaccaatagttttgggtcatcttctttcaccaacaaatgctgcaccaatatttccctttccgctccaccttcaacagaactacctccagtac 38817030  T
Q  112 tatatgaagctnnnnnnnnnnnnnnnnntcaaatttttaatcactttttaaactcttaactacgtcaataggtgataatccaatnnnnnnnnnnnnnnnn 211  Q
    |||||||||||                 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||                    
T  38817031 tatatgaagctaaaaacaaaaataaaaatcaaatttttaatcattttttaaactcttaactacgtcaataggtgataatccaataaaaaaaatgaaaaat 38817130  T
Q  212 nnnn-gtgagttttgcagagaatgtgtacctgatgctttaggaggcatggttgaagtaaagggtgaaagaggaagagaagaaggagagtgaaaatggaag 310  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  38817131 aaaaagtgagttttgcagagaatgtgtacctgatgctttaggaggcatggttgaagtaaagggtgaaagaggaag---agaaggagagtgaaaatggaag 38817227  T
Q  311 ggttttttgtaggaaaaagtgtggatttt 339  Q
    |||||||||||||||||||||||||||||    
T  38817228 ggttttttgtaggaaaaagtgtggatttt 38817256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 38822535 - 38822615
Alignment:
Q  35 gtcatcttctttcaccaacaaatgctgcaccaataattccctttctcctccaccttcaacagcactacctccagtactata 115  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||  ||||| |||||    
T  38822535 gtcatcttctttcaccaacaaatgctgcaccaatacttccctttctccaccaccttcaacagcactactcccagtgctata 38822615  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 38822791 - 38822865
Alignment:
Q  264 aagtaaagggtgaaagaggaagagaagaaggagagtgaaaatggaagggttttttgtaggaaaaagtgtggattt 338  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||| ||||    
T  38822791 aagtaaatggtgaaagaggaagagaagaaggtgagtgaaaatggaaggtttttatggaggaaaaagtgtgcattt 38822865  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 606 - 688
Target Start/End: Complemental strand, 8539658 - 8539576
Alignment:
Q  606 attcgagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||| ||||| |||||||||   ||||||||||||||||||  ||||||||| |||| |||||||||||||||||||||    
T  8539658 attcgagaattgctgttgacacattgagtttggctgagaaacacaagtaaattactcaaatacccctcggcagttaactgccg 8539576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 633 - 726
Target Start/End: Original strand, 204464 - 204556
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccct-cggcagttaactgccgcagaaattaaccgggacggcagttaactgccgaaattc 726  Q
    |||||||||||||||||   ||| ||||| |||||||||| ||||||||||||||||| ||||||||||||  ||| ||||||||| ||||||||    
T  204464 gtttggctgagaaacaccagtaatttactcaaatgccccttcggcagttaactgccgcggaaattaaccgg--cggtagttaactggcgaaattc 204556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 633 - 693
Target Start/End: Original strand, 13563625 - 13563685
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccgcagaa 693  Q
    ||||||||||||||||||| ||||||||  |||| ||||||||||||||||||||| ||||    
T  13563625 gtttggctgagaaacacatgtaaattacccaaatacccctcggcagttaactgccgaagaa 13563685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 686
Target Start/End: Original strand, 35281774 - 35281850
Alignment:
Q  610 gagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgc 686  Q
    |||| ||||| ||||||||| || ||||||||||||||||  |||| ||||  ||||||| ||||||||||||||||    
T  35281774 gagaattgctgttgacacattacctttggctgagaaacactaataatttacccaaatgcctctcggcagttaactgc 35281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 610 - 688
Target Start/End: Complemental strand, 13838562 - 13838484
Alignment:
Q  610 gagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||| ||||| |||||||||   |||||||||||||||||   ||||||||  |||| |||||||||||||||||||||    
T  13838562 gagaattgctgttgacacatgttgtttggctgagaaacacgagtaaattacccaaatacccctcggcagttaactgccg 13838484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 724
Target Start/End: Original strand, 4433113 - 4433167
Alignment:
Q  668 cccctcggcagttaactgccgcagaaattaaccgggacggcagttaactgccgaaat 724  Q
    |||||||||||||||||||||||||| ||||| ||  ||| ||||||||||||||||    
T  4433113 cccctcggcagttaactgccgcagaagttaactgg--cgggagttaactgccgaaat 4433167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 688
Target Start/End: Complemental strand, 11348608 - 11348535
Alignment:
Q  615 ttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||| |||||||||   |||||||||||||||||   ||||||||| |||||  |||||||||||||||||||    
T  11348608 ttgctgttgacacattgagtttggctgagaaacacgagtaaattactcaaatgttcctcggcagttaactgccg 11348535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 724
Target Start/End: Complemental strand, 17047641 - 17047556
Alignment:
Q  638 gctgagaaacacatataaattacttaaatgcccc-tcggcagttaactgccgcagaaattaaccgggacggcagttaactgccgaaat 724  Q
    ||||| |||||| ||||||  ||| ||||||||| |||||| ||||||||||| ||||||||||||   | |||||||||||||||||    
T  17047641 gctgaaaaacacctataaaacactgaaatgccccctcggcatttaactgccgcggaaattaaccgg--tgacagttaactgccgaaat 17047556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 681
Target Start/End: Complemental strand, 40625029 - 40624982
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagtta 681  Q
    |||||||||||||||||||||||  ||  |||||||||||||||||||    
T  40625029 tttggctgagaaacacatataaaagacgcaaatgcccctcggcagtta 40624982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 688
Target Start/End: Original strand, 30192451 - 30192505
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||| |||||||||||   ||||||||| |||||||| |||||||||||||||||    
T  30192451 tttgactgagaaacacgagtaaattactcaaatgcccttcggcagttaactgccg 30192505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 688
Target Start/End: Complemental strand, 35672119 - 35672065
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||    ||||||||| ||||| ||||||||||||||||||||    
T  35672119 tttggctgagaaacatgagtaaattactcaaatgtccctcggcagttaactgccg 35672065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 688
Target Start/End: Original strand, 18512171 - 18512244
Alignment:
Q  615 ttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||   |||||||| ||||||||   ||||||| | |||||| | |||||||||||||||||    
T  18512171 ttgctattgacacatttagtttggcttagaaacacgagtaaattattcaaatgctcatcggcagttaactgccg 18512244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 688
Target Start/End: Complemental strand, 18512784 - 18512712
Alignment:
Q  615 ttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||| |||||||||   |||||||||||||||||   ||||||||| |||||| | |||||||||||||||||    
T  18512784 ttgctgttgacacatttagtttggctgagaaacacgagtaaattact-aaatgctcttcggcagttaactgccg 18512712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 688
Target Start/End: Original strand, 20509314 - 20509367
Alignment:
Q  635 ttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||| |||| |||| ||||||||| || |||||||| |||||    
T  20509314 ttggctgagaaacacaaataatttacctaaatgcccttcagcagttaattgccg 20509367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 615 - 726
Target Start/End: Original strand, 41881864 - 41881973
Alignment:
Q  615 ttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccgcagaaattaaccgggacggcagttaa 714  Q
    ||||| ||||||||||||  ||| |||| | ||||  |||||||||| ||||| | |||| ||||||||||||||| |||||||||  ||||||||||||    
T  41881864 ttgctcttgacacatcactgttgactgaaacacaccaataaattactcaaatgtcactcgacagttaactgccgcaaaaattaacc--gacggcagttaa 41881961  T
Q  715 ctgccgaaattc 726  Q
    ||| ||||||||    
T  41881962 ctgtcgaaattc 41881973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 610 - 688
Target Start/End: Original strand, 29306495 - 29306573
Alignment:
Q  610 gagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||| ||||||||||||||| || ||||||||||||||||   ||| ||||  ||||||||||||||||||||||||||    
T  29306495 gagaattgctattgacacattacctttggctgagaaacactagtaatttacccaaatgcccctcggcagttaactgccg 29306573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 633 - 688
Target Start/End: Complemental strand, 18884619 - 18884564
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||||||    
T  18884619 gtttggctgagaaacacgagtaaattactcaaatgcccctcggcagttaactgccg 18884564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 633 - 688
Target Start/End: Original strand, 20208468 - 20208523
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||||   ||||||||| ||||| ||||||||||||||||||||    
T  20208468 gtttggctgagaaacacgagtaaattactcaaatgtccctcggcagttaactgccg 20208523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 686
Target Start/End: Original strand, 37295209 - 37295274
Alignment:
Q  621 ttgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgc 686  Q
    ||||||||| || ||||||||||||||||   ||| ||||  ||||||||||||||||||||||||    
T  37295209 ttgacacattacatttggctgagaaacactagtaatttacccaaatgcccctcggcagttaactgc 37295274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 685
Target Start/End: Complemental strand, 18411264 - 18411212
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactg 685  Q
    ||||| |||||||||||   |||||||||||||||||||||| ||||||||||    
T  18411264 gtttgactgagaaacacgagtaaattacttaaatgcccctcgacagttaactg 18411212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 724
Target Start/End: Complemental strand, 47153465 - 47153393
Alignment:
Q  652 ataaattacttaaatgcccc--tcggcagttaactgccgcagaaattaaccgggacggcagttaactgccgaaat 724  Q
    |||||||||| ||||||| |  ||||||||||||||||||||||||||| | |  ||| ||||||||||||||||    
T  47153465 ataaattactcaaatgcctccatcggcagttaactgccgcagaaattaatcag--cggtagttaactgccgaaat 47153393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 685
Target Start/End: Complemental strand, 48807501 - 48807449
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactg 685  Q
    |||||||||||||||||   ||||||||| ||||| |||||||||||||||||    
T  48807501 gtttggctgagaaacacgagtaaattactcaaatgtccctcggcagttaactg 48807449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 688
Target Start/End: Original strand, 6790222 - 6790277
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| ||||||||| |||| |||| |||| ||| |||||||||||||||||    
T  6790222 gtttggctgtgaaacacatgtaaaatactaaaatacccttcggcagttaactgccg 6790277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 684
Target Start/End: Complemental strand, 6791035 - 6790984
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaact 684  Q
    ||||||||||||||||||| |||| |||| |||| ||||||| |||||||||    
T  6791035 gtttggctgagaaacacatgtaaaatactaaaatacccctcgacagttaact 6790984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Complemental strand, 14201622 - 14201587
Alignment:
Q  653 taaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14201622 taaattactcaaatgcccctcggcagttaactgccg 14201587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Complemental strand, 21022983 - 21022948
Alignment:
Q  653 taaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| ||||||||||||||||||||||||||    
T  21022983 taaattactcaaatgcccctcggcagttaactgccg 21022948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 687
Target Start/End: Complemental strand, 50023662 - 50023608
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgcc 687  Q
    |||||||||||| |||||  ||| |||  ||||||||||||||||||||||||||    
T  50023662 gtttggctgagacacacaagtaatttatctaaatgcccctcggcagttaactgcc 50023608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 687
Target Start/End: Complemental strand, 50030780 - 50030726
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgcc 687  Q
    |||||||||||| |||||  ||| |||  ||||||||||||||||||||||||||    
T  50030780 gtttggctgagacacacaagtaatttatctaaatgcccctcggcagttaactgcc 50030726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 669 - 725
Target Start/End: Complemental strand, 121833 - 121779
Alignment:
Q  669 ccctcggcagttaactgccgcagaaattaaccgggacggcagttaactgccgaaatt 725  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||    
T  121833 ccctcggcagttaactgccgcggaaattaaccgg--cggcagttaactgccgaaatt 121779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 633 - 688
Target Start/End: Complemental strand, 34139784 - 34139729
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||||||    
T  34139784 gtttggctgagaaacacgagtaaattactcaaatgcccctcggcagttaactgccg 34139729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 688
Target Start/End: Original strand, 14101407 - 14101461
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||||||||   ||||||||| |||||||||| |||||||||||||||    
T  14101407 tttggctgagaaacacgagtaaattactcaaatgccccttggcagttaactgccg 14101461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 688
Target Start/End: Original strand, 14411424 - 14411478
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||||||||   ||||||||| |||||||||| |||||||||||||||    
T  14411424 tttggctgagaaacacgagtaaattactcaaatgccccttggcagttaactgccg 14411478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 656 - 724
Target Start/End: Original strand, 40810513 - 40810580
Alignment:
Q  656 attacttaaatgcccc-tcggcagttaactgccgcagaaattaaccgggacggcagttaactgccgaaat 724  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||  |||||||| ||||| |||||||    
T  40810513 attacttaaatgccccctcagcagttaactgccgccgaaattaacc--gacggcaggtaacttccgaaat 40810580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 688
Target Start/End: Complemental strand, 14102481 - 14102408
Alignment:
Q  615 ttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||| |||||||||   ||||||||||||||||    ||||||||| |||||||||||| |||||||||||||    
T  14102481 ttgctgttgacacatttggtttggctgagaaacatgagtaaattactcaaatgcccctcgacagttaactgccg 14102408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 688
Target Start/End: Complemental strand, 14412498 - 14412425
Alignment:
Q  615 ttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||| |||||||||   ||||||||||||||||    ||||||||| |||||||||||| |||||||||||||    
T  14412498 ttgctgttgacacatttggtttggctgagaaacatgagtaaattactcaaatgcccctcgacagttaactgccg 14412425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 688
Target Start/End: Complemental strand, 38084892 - 38084807
Alignment:
Q  603 tttattcgagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||| |||| ||||| ||||||||| ||  |||||||| ||||||   ||| ||||  ||||||||||||||||||||||||||    
T  38084892 tttattggagaattgctgttgacacattaccattggctgaaaaacactagtaatttacccaaatgcccctcggcagttaactgccg 38084807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 688
Target Start/End: Original strand, 7974897 - 7974952
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||||   ||||||||  |||| |||||||||||||||||||||    
T  7974897 gtttggctgagaaacacgagtaaattacccaaatacccctcggcagttaactgccg 7974952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 725
Target Start/End: Original strand, 8177716 - 8177792
Alignment:
Q  648 acatataaattacttaaatgc-ccctcggcagttaactgccgcagaaattaaccgggacggcagttaactgccgaaatt 725  Q
    |||||||||||||| |||||| | |||| | ||||||| |||| ||||||||||||  ||||||||||||| |||||||    
T  8177716 acatataaattactgaaatgcactctcgccggttaactaccgcggaaattaaccgg--cggcagttaactgtcgaaatt 8177792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Complemental strand, 12210685 - 12210650
Alignment:
Q  653 taaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| ||||||||||||||||||||||||||    
T  12210685 taaattactcaaatgcccctcggcagttaactgccg 12210650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 688
Target Start/End: Complemental strand, 18220067 - 18220016
Alignment:
Q  637 ggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||| |||||||| ||||||||||||||| | |||||||||||| |||||    
T  18220067 ggctgaaaaacacatgtaaattacttaaatgtctctcggcagttaattgccg 18220016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 688
Target Start/End: Complemental strand, 38266212 - 38266161
Alignment:
Q  637 ggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||| ||| |||| ||||||||| ||||| ||||||||||||||||||||    
T  38266212 ggctgaaaaatacatgtaaattactcaaatgtccctcggcagttaactgccg 38266161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 687
Target Start/End: Original strand, 19072399 - 19072449
Alignment:
Q  637 ggctgagaaacacatataaattacttaaatgcccctcggcagttaactgcc 687  Q
    |||||||||||||   ||||||||| |||||||||||| ||||||||||||    
T  19072399 ggctgagaaacacgagtaaattactcaaatgcccctcgacagttaactgcc 19072449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 686
Target Start/End: Complemental strand, 45258099 - 45258066
Alignment:
Q  653 taaattacttaaatgcccctcggcagttaactgc 686  Q
    ||||||||| ||||||||||||||||||||||||    
T  45258099 taaattactcaaatgcccctcggcagttaactgc 45258066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 686
Target Start/End: Complemental strand, 49141713 - 49141680
Alignment:
Q  653 taaattacttaaatgcccctcggcagttaactgc 686  Q
    ||||||||| ||||||||||||||||||||||||    
T  49141713 taaattactcaaatgcccctcggcagttaactgc 49141680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 633 - 688
Target Start/End: Complemental strand, 709 - 654
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||||||    
T  709 gtttggctgagaaacacgagtaaattactcaaatgcccctcggcagttaactgccg 654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 633 - 688
Target Start/End: Original strand, 13743251 - 13743306
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||    
T  13743251 gtttggctgagaaacacatgtaaattacccaaatacccctcggcagttaactgccg 13743306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 639 - 688
Target Start/End: Original strand, 4274050 - 4274099
Alignment:
Q  639 ctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  4274050 ctgagaaacacatgtaaattattcaaatgcccctcggcagttaactgccg 4274099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 688
Target Start/End: Original strand, 4330750 - 4330805
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| |||||||   ||||||||| |||||| |||||||||||||||||||    
T  4330750 gtttggctgggaaacacgggtaaattactcaaatgctcctcggcagttaactgccg 4330805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 688
Target Start/End: Complemental strand, 10492997 - 10492930
Alignment:
Q  621 ttgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| || ||||||||||||||||   ||| ||||  |||||||||||| |||||||||||||    
T  10492997 ttgacacattacctttggctgagaaacactagtaatttacccaaatgcccctcgacagttaactgccg 10492930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 688
Target Start/End: Original strand, 19842462 - 19842517
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||| ||||||||||||  ||||||| | |||||||| |||||||||||||||||    
T  19842462 gtttgtctgagaaacacaagtaaattattcaaatgcccttcggcagttaactgccg 19842517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Original strand, 19988437 - 19988472
Alignment:
Q  653 taaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| ||||||||||||||||||||||||||    
T  19988437 taaattactcaaatgcccctcggcagttaactgccg 19988472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 687
Target Start/End: Original strand, 34712194 - 34712245
Alignment:
Q  637 ggctgagaaacacatataaattacttaaatg-cccctcggcagttaactgcc 687  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||| |||||    
T  34712194 ggctgagaaacacatgtaaattactcaaatgccccctcggcagttagctgcc 34712245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Complemental strand, 50998775 - 50998740
Alignment:
Q  653 taaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| ||||||||||||||||||||||||||    
T  50998775 taaattactcaaatgcccctcggcagttaactgccg 50998740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 635 - 685
Target Start/End: Complemental strand, 34648317 - 34648267
Alignment:
Q  635 ttggctgagaaacacatataaattacttaaatgcccctcggcagttaactg 685  Q
    ||||||||||||||||| ||| ||||| |||| |||||| |||||||||||    
T  34648317 ttggctgagaaacacatgtaatttactcaaatacccctcagcagttaactg 34648267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 686
Target Start/End: Complemental strand, 34712871 - 34712821
Alignment:
Q  637 ggctgagaaacacatataaattacttaaatg-cccctcggcagttaactgc 686  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||| ||||    
T  34712871 ggctgagaaacacatgtaaattactcaaatgccccctcggcagttagctgc 34712821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 687
Target Start/End: Original strand, 51755628 - 51755682
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgcc 687  Q
    |||||||||||||| ||   ||||||||| ||||||||||| |||||||||||||    
T  51755628 gtttggctgagaaatacgagtaaattactcaaatgcccctcagcagttaactgcc 51755682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 686
Target Start/End: Complemental strand, 4275061 - 4275012
Alignment:
Q  637 ggctgagaaacacatataaattacttaaatgcccctcggcagttaactgc 686  Q
    ||||||||||||||| ||||||||| |||||| |||| || |||||||||    
T  4275061 ggctgagaaacacatgtaaattactcaaatgctcctctgctgttaactgc 4275012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 684
Target Start/End: Complemental strand, 24703524 - 24703479
Alignment:
Q  639 ctgagaaacacatataaattacttaaatgcccctcggcagttaact 684  Q
    |||||||||||   ||||||||| ||||||||||||||||||||||    
T  24703524 ctgagaaacacgagtaaattactcaaatgcccctcggcagttaact 24703479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 634 - 688
Target Start/End: Complemental strand, 12207319 - 12207265
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||||||||  |||||||||| |||||||| |||||||||||||||||    
T  12207319 tttggctgagaaacacgaataaattactcaaatgcccatcggcagttaactgccg 12207265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 634 - 688
Target Start/End: Complemental strand, 12451747 - 12451693
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||||||||  |||||||||| |||||||| |||||||||||||||||    
T  12451747 tttggctgagaaacacgaataaattactcaaatgcccatcggcagttaactgccg 12451693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 634 - 687
Target Start/End: Original strand, 13782194 - 13782247
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgcc 687  Q
    ||||||||||||||||   ||||||||||||||| |||||||||||||||||||    
T  13782194 tttggctgagaaacacgagtaaattacttaaatgtccctcggcagttaactgcc 13782247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 688
Target Start/End: Complemental strand, 38331169 - 38331097
Alignment:
Q  616 tgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||| ||||||||||  ||||||||||||||||||| |||| |||  |||||||| || ||||||||||||||    
T  38331169 tgctgttgacacatcttgtttggctgagaaacacatgtaaaataccaaaatgcccttctgcagttaactgccg 38331097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 633 - 688
Target Start/End: Complemental strand, 39277576 - 39277521
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||||   ||||||| | ||||||||||||||||||||||||||    
T  39277576 gtttggctgagaaacacgagtaaattattcaaatgcccctcggcagttaactgccg 39277521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 688
Target Start/End: Original strand, 28694018 - 28694091
Alignment:
Q  615 ttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||| |||||||||   |||||| ||||||||||   ||||||||| ||||| ||||||||||||||||||||    
T  28694018 ttgctgttgacacatttagtttggttgagaaacacgagtaaattactcaaatgtccctcggcagttaactgccg 28694091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 688
Target Start/End: Complemental strand, 34798921 - 34798868
Alignment:
Q  635 ttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||||||||  ||| ||||  ||||||||||||||||||||||||||    
T  34798921 ttggctgagaaacacaagtaatttacccaaatgcccctcggcagttaactgccg 34798868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 685
Target Start/End: Complemental strand, 38134227 - 38134175
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactg 685  Q
    |||||||||||| |||||  ||||||||| |||||||| ||||||||||||||    
T  38134227 gtttggctgagagacacaagtaaattactcaaatgcccatcggcagttaactg 38134175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 684
Target Start/End: Complemental strand, 39513302 - 39513251
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaact 684  Q
    ||||| |||||||||||   ||||||||| ||||||||||||||||||||||    
T  39513302 gtttgactgagaaacacgagtaaattactcaaatgcccctcggcagttaact 39513251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Original strand, 44933837 - 44933872
Alignment:
Q  653 taaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| ||||||||||||||||||||||||||    
T  44933837 taaattactcaaatgcccctcggcagttaactgccg 44933872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 688
Target Start/End: Original strand, 25994409 - 25994462
Alignment:
Q  635 ttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||  |||| ||||  |||||||||||| |||||||||||||    
T  25994409 ttggctgagaaacacggataatttacccaaatgcccctcgacagttaactgccg 25994462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 684
Target Start/End: Original strand, 34891950 - 34892019
Alignment:
Q  615 ttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaact 684  Q
    ||||| |||||||||   |||| ||||||||||||  |||||||| | |||||| |||||||||||||||    
T  34891950 ttgctgttgacacatttggtttagctgagaaacacgaataaattattcaaatgctcctcggcagttaact 34892019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 688
Target Start/End: Original strand, 36344966 - 36345019
Alignment:
Q  635 ttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||   ||| ||||  ||||||||||||||||||||||||||    
T  36344966 ttggctgagaaacactagtaatttacccaaatgcccctcggcagttaactgccg 36345019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 688
Target Start/End: Original strand, 30801978 - 30802056
Alignment:
Q  610 gagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||| ||||| ||||||||| || ||||||||||||||||   ||| ||||  ||||||||||||||||||||||||||    
T  30801978 gagaattgctgttgacacattacctttggctgagaaacactagtaatttacccaaatgcccctcggcagttaactgccg 30802056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 615 - 686
Target Start/End: Original strand, 14002459 - 14002530
Alignment:
Q  615 ttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgc 686  Q
    ||||| |||||||||   |||||||||||||||||   ||||||||| ||||| ||||||||||||||||||    
T  14002459 ttgctgttgacacatttggtttggctgagaaacacgagtaaattactcaaatgtccctcggcagttaactgc 14002530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 682
Target Start/End: Complemental strand, 31568697 - 31568648
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaa 682  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||||||    
T  31568697 gtttggctgagaaacacatgtaaaatactaaaatacccctcggcagttaa 31568648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 637 - 688
Target Start/End: Original strand, 2983361 - 2983413
Alignment:
Q  637 ggctgagaaacacatataaattacttaaatgc-ccctcggcagttaactgccg 688  Q
    ||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||    
T  2983361 ggctgagaaacacatgtaaattactcaaatgctccctcggcagttagctgccg 2983413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 688
Target Start/End: Original strand, 4286052 - 4286107
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||||   ||||||||| |||| ||| |||||||||||||||||    
T  4286052 gtttggctgagaaacacgagtaaattactcaaatacccatcggcagttaactgccg 4286107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 685
Target Start/End: Complemental strand, 12252596 - 12252545
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactg 685  Q
    ||||| ||||||||||| |||||||||| ||||| || ||||||||||||||    
T  12252596 tttggttgagaaacacaaataaattactcaaatgtccttcggcagttaactg 12252545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Complemental strand, 29074098 - 29074063
Alignment:
Q  653 taaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29074098 taaattactcaaatgcccctcggcagttaactgccg 29074063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 688
Target Start/End: Original strand, 29947745 - 29947780
Alignment:
Q  653 taaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29947745 taaattactcaaatgcccctcggcagttaactgccg 29947780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 684
Target Start/End: Original strand, 33222574 - 33222625
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaact 684  Q
    |||||||||||||||||   ||||||||| |||||| |||||||||||||||    
T  33222574 gtttggctgagaaacacgagtaaattactcaaatgctcctcggcagttaact 33222625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 688
Target Start/End: Original strand, 40156357 - 40156412
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||||   ||||||||| |||||||||||| ||||||| |||||    
T  40156357 gtttggctgagaaacacgagtaaattactcaaatgcccctcgacagttaattgccg 40156412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 688
Target Start/End: Complemental strand, 3086201 - 3086123
Alignment:
Q  610 gagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||| ||||| ||||||||| || ||||||||||||||||   ||| ||||  |||||||| |||| ||||||||||||    
T  3086201 gagaattgctgttgacacattacctttggctgagaaacactagtaatttacccaaatgcccttcggtagttaactgccg 3086123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 688
Target Start/End: Complemental strand, 4286815 - 4286761
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||||||||   ||||||||| |||| ||||||| |||||||||||||    
T  4286815 tttggctgagaaacactagtaaattactcaaatacccctcgacagttaactgccg 4286761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 688
Target Start/End: Complemental strand, 37322224 - 37322171
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| ||||||  |||||||||| |||||||| |||||||||||||||||    
T  37322224 tttggctgaaaaacacgaataaattactcaaatgccc-tcggcagttaactgccg 37322171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 684
Target Start/End: Complemental strand, 39033632 - 39033582
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaact 684  Q
    ||||| ||||||||||  |||| |||| |||||||||||||||||||||||    
T  39033632 tttggttgagaaacactaataatttacctaaatgcccctcggcagttaact 39033582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 688
Target Start/End: Complemental strand, 40221244 - 40221190
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||| ||||   ||||||||||||||  ||||||||||||||||||||    
T  40221244 tttggctgagatacacgagtaaattacttaaatatccctcggcagttaactgccg 40221190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 685
Target Start/End: Original strand, 3795294 - 3795347
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaat-gcccctcggcagttaactg 685  Q
    ||||||||||||||||||  |||||||||| |||  ||||||||||||||||||    
T  3795294 gtttggctgagaaacacaagtaaattacttgaatatcccctcggcagttaactg 3795347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 688
Target Start/End: Original strand, 12252082 - 12252135
Alignment:
Q  635 ttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||   ||| |||| ||||||| |||||||||||||||||||    
T  12252082 ttggctgagaaacactagtaatttacctaaatgctcctcggcagttaactgccg 12252135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 686
Target Start/End: Original strand, 24541694 - 24541747
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgc 686  Q
    |||||||||| |||||||| |||| |||| ||||| || |||||||||||||||    
T  24541694 gtttggctgaaaaacacatgtaaaatactaaaatgtccttcggcagttaactgc 24541747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 688
Target Start/End: Complemental strand, 44470149 - 44470071
Alignment:
Q  610 gagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||| ||||| |||||||||   ||||||||||||||||||| |||||||   |||| |||||||||||||||||||||    
T  44470149 gagaattgctgttgacacatgttgtttggctgagaaacacatttaaattatccaaatacccctcggcagttaactgccg 44470071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 634 - 688
Target Start/End: Original strand, 50036806 - 50036860
Alignment:
Q  634 tttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||||  ||||||||| ||||| ||||||||||||||||||||    
T  50036806 tttggctgagaaacacaagtaaattactcaaatgtccctcggcagttaactgccg 50036860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 621 - 688
Target Start/End: Complemental strand, 47653831 - 47653764
Alignment:
Q  621 ttgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||| || |||||||||||||||||  ||| ||||  ||||||| ||||||||||||||||||    
T  47653831 ttgacacattacctttggctgagaaacacaagtaatttacccaaatgcctctcggcagttaactgccg 47653764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 687
Target Start/End: Complemental strand, 13761159 - 13761105
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgcc 687  Q
    |||||| ||||||||||   ||||||||| |||||||||||||||||||||||||    
T  13761159 gtttggatgagaaacacgagtaaattactcaaatgcccctcggcagttaactgcc 13761105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 636 - 688
Target Start/End: Complemental strand, 19915427 - 19915375
Alignment:
Q  636 tggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||||||   ||||||||| |||||||| |||||||||||||||||    
T  19915427 tggctgagaaacacgagtaaattactcaaatgcccttcggcagttaactgccg 19915375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 688
Target Start/End: Complemental strand, 41459326 - 41459271
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    ||||||||||||||||||| |||| |||  |||| ||||||| |||||||||||||    
T  41459326 gtttggctgagaaacacatgtaaaataccaaaatacccctcgacagttaactgccg 41459271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 687
Target Start/End: Complemental strand, 29356787 - 29356733
Alignment:
Q  633 gtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgcc 687  Q
    ||||||||||||||||||  |||||||   |||| ||||||||||||||||||||    
T  29356787 gtttggctgagaaacacaagtaaattatccaaatacccctcggcagttaactgcc 29356733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 688
Target Start/End: Complemental strand, 49429273 - 49429195
Alignment:
Q  610 gagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||| |||||||||||||||   |||||| || |||||||   ||||||||| |||||| | |||||||||||||||||    
T  49429273 gagaattgctattgacacattgagtttggttgtgaaacacgagtaaattactcaaatgctcttcggcagttaactgccg 49429195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 688
Target Start/End: Original strand, 49660761 - 49660839
Alignment:
Q  610 gagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||| ||||| ||||||||| || ||||||||||||||||   ||| ||||  |||||| ||| |||||||||||||||    
T  49660761 gagaattgctgttgacacattacctttggctgagaaacactagtaatttacccaaatgctccttggcagttaactgccg 49660839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 684
Target Start/End: Original strand, 6759983 - 6760057
Alignment:
Q  610 gagagttgctattgacacatcacgtttggctgagaaacacatataaattacttaaatgcccctcggcagttaact 684  Q
    |||| ||||| ||||||||| || ||||||||||||||||   ||| ||||  ||||||||||||||||| ||||    
T  6759983 gagaattgctgttgacacattacctttggctgagaaacactagtaatttacccaaatgcccctcggcagtaaact 6760057  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 688
Target Start/End: Complemental strand, 456154 - 456101
Alignment:
Q  635 ttggctgagaaacacatataaattacttaaatgcccctcggcagttaactgccg 688  Q
    |||||||||||||||   ||| ||||  ||||||||||||||||||||||||||    
T  456154 ttggctgagaaacacgagtaatttacccaaatgcccctcggcagttaactgccg 456101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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