View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504R-Insertion-11 (Length: 700)
Name: NF1504R-Insertion-11
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504R-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 9 - 689
Target Start/End: Original strand, 32258348 - 32259034
Alignment:
| Q |
9 |
aaggtaatatacctagctgcaaaaatctcctcaatatagagctcctgcagaaccagcattgccttttaaaagctcccctatcagagctaaatatgagtta |
108 |
Q |
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| T |
32258348 |
aaggtaatatacctagctgcaaaaatctcctcaatatagagctcctgcagaaccagcattgccttttaaaagctcccctatcagagctaaatatgagtta |
32258447 |
T |
|
| Q |
109 |
tatctctataaatatgttgtaataagatactaaggaaacgtcagaaaaaagatactgaggaagaaataatatgtgaacaacaataaaaggtatagcgtgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32258448 |
tatctctataaatatgttgtaataagatactaaggaaacgtcagaaaaaagatactgaggaagaaataatatgtgaacaacaataaaaggtatagcgtgt |
32258547 |
T |
|
| Q |
209 |
tgaattcagtaccttatagacatctttaattagttaattccctcaacnnnnnnnt----tctttaattagttaatattagtgtatgctacttttaagtag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32258548 |
cgaattcagtaccttatagacatctttaattagttaattcccttaacaaaaaaaaaaaatctttaattagttaatattagtgtatgctacttttaagtag |
32258647 |
T |
|
| Q |
305 |
gatttctcaatattctatccatatagaacaaacgcgttatacattttactaaaatagcaatgttctaactttaggttaataaagataatcagaaaaaaga |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32258648 |
gatttctcaatattctatccatatagaacaaaggcgttatacattttactaaaatagcaatgttctaactttaggttaataaagataatcagaaaaaaga |
32258747 |
T |
|
| Q |
405 |
gcaaacacaagctaactattttttcttctttagaataattttgagaaaaaagaataatttggacaagtatatcttctagcttcctattattcgtaccttt |
504 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32258748 |
gcaaacacaagctaactattttttcttctttaaaataattttgagaaaaaagaataatttggacaagtatatcttctagcttcctattattcgtaccttt |
32258847 |
T |
|
| Q |
505 |
gatcatatatctatttcctactattgtatgagtggctaatactttagtgtccccgttgtaatttaaatctttttgacaaaaataccaaacgcgtgtc--t |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32258848 |
gatcatatatctatttcctactattgtatgagtggctaatactttagtgtccccgttgtaatttaaatctttttgacaaaaataccaaacgcgtgtctat |
32258947 |
T |
|
| Q |
603 |
atcatagcttagtattattgattcttaacctccacctttctatttttcttgtatatatataaaaccctttcatccctgtctcctcca |
689 |
Q |
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| T |
32258948 |
atcatagcttagtattattgattcttaacctccacctttctatttttcttgtatatatataaaaccctttcatccctgtctcctcca |
32259034 |
T |
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