View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504R-Insertion-12 (Length: 511)

Name: NF1504R-Insertion-12
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504R-Insertion-12
NF1504R-Insertion-12
[»] chr7 (1 HSPs)
chr7 (9-511)||(47028928-47029430)


Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Complemental strand, 47029430 - 47028928
Alignment:
Q  9 caaacttcattaatggagaaggccaggactattacggctctagaaagaaggttgaaggttatgttagtcgaaaagggtgctaaggtggaagagctaaggc 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47029430 caaacttcattaatggagaaggccaggactattacggccctagaaagaaggttgaaggttatgttagtcgaaaagggtgctaaggaggaagagctaaggc 47029331  T
Q  109 tggccacaaaagagttacttcattaatggagaagtcaatcctatccgaggaggatctggaggccgtgaagaaagagaggagtttgctgctttaaagttga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47029330 tggccacaaaagagttacttcattaatggagaagtcaatcctatctgaggaggatctggaggccgtgaagaaagagaggagtttgctgctttaaagttga 47029231  T
Q  209 gagggacggtttggtggaccaagtttgcaaagtacgtctggactcatttaataacgccattgcccagatccaacaattcaatcctggcgtggttttgaag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47029230 gagggacggtttggtggaccaagtttgcaaagtacgtctggactcctttaataacgccattgcccagatccaacaattcaatcctggcgtggttttgaag 47029131  T
Q  309 ctggacgagcttgattgctgcaaggagtttaacgaatgggagattgtctagatgtaatttgttttgaacaagggctcggtgcctcgtgtcttttggtggc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47029130 ctggacgagcttgattgctgcaaggagtttaacgaatgggagattgtctagatgtaatttgttttgaacaagggctcggtgcctcgtgtcttttggtggc 47029031  T
Q  409 cactgtgtatgtatccgactttgaaatatttcttgtatgcactaagtgttttgaatgcttctgttctttgtataccgtgtatttttctccgactgtcgtt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  47029030 cactgtgtatgtatccgactttgaaatatttcttgtatgcactaagtgttttgaatgcttctgttctttgtatactgtgtatttttctcggactgtcgtt 47028931  T
Q  509 tcc 511  Q
    |||    
T  47028930 tcc 47028928  T

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