View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504R-Insertion-13 (Length: 475)

Name: NF1504R-Insertion-13
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504R-Insertion-13
NF1504R-Insertion-13
[»] chr8 (17 HSPs)
chr8 (175-472)||(27049139-27049448)
chr8 (54-133)||(27049450-27049529)
chr8 (155-233)||(10120780-10120858)
chr8 (162-280)||(10114465-10114584)
chr8 (158-247)||(9956785-9956875)
chr8 (187-258)||(27028829-27028901)
chr8 (155-223)||(32840954-32841022)
chr8 (186-256)||(1930035-1930106)
chr8 (155-285)||(7514549-7514680)
chr8 (159-285)||(11376674-11376800)
chr8 (155-285)||(26771236-26771367)
chr8 (191-285)||(33714240-33714334)
chr8 (157-224)||(33808336-33808403)
chr8 (192-234)||(4281569-4281611)
chr8 (183-224)||(27492970-27493011)
chr8 (203-271)||(28769355-28769424)
chr8 (193-280)||(24558829-24558917)
[»] chr3 (18 HSPs)
chr3 (155-285)||(21367638-21367769)
chr3 (154-222)||(26878235-26878303)
chr3 (154-285)||(34610773-34610905)
chr3 (186-256)||(35394497-35394568)
chr3 (155-281)||(45264334-45264461)
chr3 (155-287)||(402510-402643)
chr3 (186-285)||(20170707-20170807)
chr3 (190-260)||(2719464-2719535)
chr3 (192-285)||(36783339-36783433)
chr3 (232-282)||(37689430-37689480)
chr3 (165-274)||(45541553-45541662)
chr3 (200-285)||(37788831-37788916)
chr3 (201-260)||(50600192-50600252)
chr3 (159-280)||(20880452-20880574)
chr3 (206-259)||(34254827-34254881)
chr3 (203-255)||(37273135-37273188)
chr3 (189-285)||(25447247-25447343)
chr3 (185-260)||(32582740-32582816)
[»] chr5 (29 HSPs)
chr5 (181-260)||(7984965-7985045)
chr5 (159-285)||(39105435-39105562)
chr5 (203-285)||(12425542-12425625)
chr5 (181-285)||(9202742-9202847)
chr5 (193-286)||(6587113-6587207)
chr5 (157-269)||(28776980-28777093)
chr5 (192-247)||(4014429-4014485)
chr5 (155-246)||(42100321-42100413)
chr5 (155-222)||(7808540-7808607)
chr5 (159-285)||(17258856-17258982)
chr5 (155-269)||(36639509-36639623)
chr5 (202-284)||(1619062-1619144)
chr5 (206-283)||(7319379-7319457)
chr5 (158-243)||(29925854-29925940)
chr5 (181-274)||(34160713-34160807)
chr5 (190-256)||(7319011-7319078)
chr5 (203-285)||(7674619-7674702)
chr5 (157-247)||(37611186-37611276)
chr5 (157-247)||(37787916-37788006)
chr5 (162-247)||(17368685-17368770)
chr5 (157-234)||(10639976-10640053)
chr5 (192-260)||(25461321-25461390)
chr5 (213-280)||(2563186-2563254)
chr5 (181-229)||(6096575-6096623)
chr5 (203-274)||(10272447-10272519)
chr5 (206-269)||(18637039-18637103)
chr5 (234-274)||(32408640-32408680)
chr5 (186-285)||(35446026-35446126)
chr5 (186-281)||(40119867-40119963)
[»] chr6 (12 HSPs)
chr6 (155-285)||(2735040-2735171)
chr6 (159-285)||(9093528-9093655)
chr6 (165-260)||(31624086-31624181)
chr6 (158-284)||(13907557-13907684)
chr6 (155-233)||(9912159-9912237)
chr6 (159-243)||(31813174-31813259)
chr6 (192-285)||(769110-769203)
chr6 (181-247)||(34430455-34430522)
chr6 (201-286)||(8364990-8365076)
chr6 (203-247)||(835265-835310)
chr6 (155-254)||(2454991-2455090)
chr6 (188-260)||(9109252-9109325)
[»] chr2 (31 HSPs)
chr2 (159-285)||(1625871-1625998)
chr2 (167-285)||(18066099-18066218)
chr2 (155-281)||(26626848-26626975)
chr2 (157-247)||(40682365-40682455)
chr2 (214-281)||(8017409-8017477)
chr2 (109-273)||(2142636-2142802)
chr2 (165-246)||(750680-750762)
chr2 (202-274)||(680485-680558)
chr2 (205-285)||(12464491-12464572)
chr2 (155-285)||(26143608-26143740)
chr2 (188-247)||(40279416-40279476)
chr2 (158-256)||(16451118-16451217)
chr2 (192-285)||(18962042-18962137)
chr2 (191-285)||(28039336-28039431)
chr2 (189-247)||(40279276-40279335)
chr2 (189-247)||(40279346-40279405)
chr2 (187-233)||(7928299-7928345)
chr2 (192-285)||(12313178-12313272)
chr2 (186-247)||(16398123-16398185)
chr2 (203-245)||(43868289-43868331)
chr2 (158-247)||(45229520-45229610)
chr2 (195-247)||(10646297-10646350)
chr2 (203-247)||(15977994-15978039)
chr2 (205-257)||(33319830-33319883)
chr2 (191-247)||(35379020-35379077)
chr2 (187-279)||(36043881-36043974)
chr2 (189-285)||(40279168-40279265)
chr2 (186-285)||(3611197-3611297)
chr2 (186-257)||(9174814-9174886)
chr2 (186-230)||(21788341-21788385)
chr2 (191-231)||(43511111-43511151)
[»] chr7 (17 HSPs)
chr7 (155-285)||(20526417-20526548)
chr7 (164-285)||(39967891-39968013)
chr7 (186-256)||(36517579-36517650)
chr7 (212-274)||(39393603-39393665)
chr7 (110-282)||(33678754-33678927)
chr7 (194-285)||(40688993-40689085)
chr7 (155-285)||(39907774-39907903)
chr7 (203-285)||(44821930-44822013)
chr7 (155-268)||(20526897-20527011)
chr7 (203-257)||(25596032-25596087)
chr7 (165-247)||(34035926-34036009)
chr7 (155-281)||(17248530-17248654)
chr7 (155-247)||(44989645-44989739)
chr7 (212-281)||(47177611-47177681)
chr7 (213-285)||(12110331-12110404)
chr7 (201-285)||(22283758-22283843)
chr7 (205-269)||(43648227-43648292)
[»] chr4 (17 HSPs)
chr4 (158-285)||(1706593-1706721)
chr4 (155-285)||(22661980-22662112)
chr4 (155-285)||(22666459-22666591)
chr4 (203-285)||(28300315-28300398)
chr4 (203-285)||(51630082-51630165)
chr4 (181-258)||(55414414-55414492)
chr4 (189-285)||(3155574-3155671)
chr4 (164-247)||(17822842-17822926)
chr4 (159-258)||(24169261-24169361)
chr4 (187-282)||(40174537-40174633)
chr4 (157-224)||(48719362-48719428)
chr4 (202-247)||(825505-825551)
chr4 (192-269)||(35571636-35571714)
chr4 (203-260)||(43932431-43932489)
chr4 (238-286)||(24091433-24091481)
chr4 (165-217)||(49939929-49939981)
chr4 (204-287)||(54392836-54392920)
[»] chr1 (25 HSPs)
chr1 (155-286)||(4576775-4576906)
chr1 (188-271)||(45975675-45975759)
chr1 (159-285)||(10199381-10199507)
chr1 (158-271)||(7136970-7137083)
chr1 (194-285)||(9656621-9656713)
chr1 (155-223)||(11941296-11941364)
chr1 (186-285)||(24915050-24915150)
chr1 (188-247)||(51695496-51695556)
chr1 (187-285)||(27820337-27820436)
chr1 (156-285)||(3887601-3887731)
chr1 (155-247)||(7941615-7941708)
chr1 (154-285)||(39976177-39976312)
chr1 (194-285)||(34290207-34290299)
chr1 (196-270)||(35179125-35179200)
chr1 (186-233)||(38503464-38503511)
chr1 (157-224)||(47498809-47498876)
chr1 (192-257)||(10744300-10744366)
chr1 (192-285)||(31517745-31517839)
chr1 (220-274)||(31918235-31918289)
chr1 (212-285)||(49888738-49888812)
chr1 (201-285)||(7218088-7218173)
chr1 (192-260)||(14629971-14630040)
chr1 (201-257)||(32113657-32113714)
chr1 (190-247)||(38882915-38882972)
chr1 (233-285)||(48830123-48830175)
[»] scaffold0018 (1 HSPs)
scaffold0018 (204-285)||(178342-178424)
[»] scaffold0098 (1 HSPs)
scaffold0098 (212-249)||(50852-50889)
[»] scaffold0024 (1 HSPs)
scaffold0024 (213-256)||(21311-21355)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 175 - 472
Target Start/End: Complemental strand, 27049448 - 27049139
Alignment:
Q  175 aaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataatt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27049448 aaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttatacgaaaataatt 27049349  T
Q  275 gaactttatttat------------aaataaattatacgcaagtgcttgtactataagctttaagttagatgtttatccaaacagagtctaaatcttttt 362  Q
    |||||||||||||            |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27049348 gaactttatttatcttttgctatagaaataaattatacgtaagtgcttgtactataagctttaaattagatgtttatccaaacagagtctaaatcttttt 27049249  T
Q  363 tgtactaaaaagttgatagtgtatgtaatgtgttcaatttgcatatagattttgtatggatgttcctaaaatactcttatatgtatagattagaagtgtt 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27049248 tgtactaaaaagttgatagtgtatgtaatgtgttcaatttgcatatagattttgtatggatgttcctaaaatactcttatatgtatagattagacgtgtt 27049149  T
Q  463 caactctgac 472  Q
    ||||||||||    
T  27049148 caactctgac 27049139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 27049529 - 27049450
Alignment:
Q  54 atgtgtggatgtcggacacgacatgtgattaatttttcaatttaggaaggcgtgattggattgacttatttaaatttatc 133  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  27049529 atgtgtggatgtcggacatgacatgtgattaatttttcaatctaggaaggcgtgattggattgacttatttaaacttatc 27049450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 10120858 - 10120780
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa 233  Q
    |||||||||||||||||||||||   |||| |||||||  |||||||||||||||| ||||||||||||| ||||||||    
T  10120858 actgtttgagagaacttatgaaaacagcttatgacatttatcatatgctgttttcagcttattttcataagttctccaa 10120780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 10114584 - 10114465
Alignment:
Q  162 gagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 260  Q
    ||||||||||||||||    ||| | |||||  |||||||||||||||| ||||||||||||  |||||||| |||||| ||||||| || |||||||||    
T  10114584 gagagaacttatgaaaacaacttataacatttatcatatgctgttttcagcttattttcatatgttctccaatatagctaatgaaaacagcttatagctt 10114485  T
Q  261 gtacgaaaataattgaactt 280  Q
     ||| |||| |||| |||||    
T  10114484 ataccaaaacaattcaactt 10114465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 9956785 - 9956875
Alignment:
Q  158 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    |||||||||||||||||||| | | || || ||||||||||| |  ||||||| ||||||||||||| |||||||| |||| |||||||||    
T  9956785 gtttgagagaacttatgaaaatagtttatggcattgttcataagtagttttcagcttattttcataagttctccaagatagattatgaaaa 9956875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 27028901 - 27028829
Alignment:
Q  187 gacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagc 258  Q
    |||||| |||||| ||| |||||| |||||||||||||  ||||||| |||||||||||||| || |||||||    
T  27028901 gacatttttcataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagc 27028829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 32840954 - 32841022
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcata 223  Q
    |||||||| ||||||||||||||    ||| |||||||||||||| | |||||||| ||||||||||||    
T  32840954 actgtttgggagaacttatgaaaacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 1930106 - 1930035
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 256  Q
    |||||||||||||| |||||||||| |||||||||| ||  || |||| |||||||||||||| || |||||    
T  1930106 tgacattgttcataagctgttttcagcttattttcacaaggtcaccaagatagcttatgaaaacagcttata 1930035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 7514680 - 7514549
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagttt 253  Q
    |||||||| |||||||| |||||   |||  | |||||||||||| ||||||| || || |||||||  | |||| |||| ||||||||||||| || ||    
T  7514680 actgtttgggagaacttgtgaaagcagctgataacattgttcataagctgtttccaactaattttcactagttctgcaaaatagcttatgaaaacagctt 7514581  T
Q  254 atagcttgtacgaaaataattgaactttattt 285  Q
     |||||| || ||||| |||||||| ||||||    
T  7514580 gtagcttatatgaaaacaattgaacattattt 7514549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 11376800 - 11376674
Alignment:
Q  159 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctc-caaatagcttatgaaaaaagtttatag 257  Q
    |||| |||||||||||||| | |||||||||| |||| ||||  |||||||| ||||||||||||  |||||  |||||||||| ||||  |  ||||||    
T  11376800 tttgggagaacttatgaaaatagcttgtgaca-tgttaatatcttgttttcagcttattttcatagattctctaaaatagcttaagaaagcatcttatag 11376702  T
Q  258 cttgtacgaaaataattgaactttattt 285  Q
    ||| ||  |||||||||  |||||||||    
T  11376701 cttatatcaaaataattagactttattt 11376674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 26771367 - 26771236
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 253  Q
    |||||||| ||||||||||||||   |||| ||||| | |||| | ||  |||||| ||||||||||||| ||||| || ||| ||||| ||||||| ||    
T  26771367 actgtttgggagaacttatgaaaacagcttatgacaattttcaaaagcctttttcaacttattttcataagttctctaatatatcttataaaaaaagctt 26771268  T
Q  254 atagcttgtacgaaaataattgaactttattt 285  Q
    ||||| | ||| |||| |||| || |||||||    
T  26771267 atagcatatacaaaaacaatttaagtttattt 26771236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 33714240 - 33714334
Alignment:
Q  191 ttgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    ||||||||| |||||||||| |||||||| ||||  ||||| | |||||||||||||| || |||||| |||||| |||||| ||  |||||||||    
T  33714240 ttgttcataagctgttttcagcttatttttataagctctcccagatagcttatgaaaatagcttatagattgtac-aaaatagtttgactttattt 33714334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 33808403 - 33808336
Alignment:
Q  157 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataa 224  Q
    |||||| |||||||||||||| | |||| ||| |||||||||| | |||||| | |||||||||||||    
T  33808403 tgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttattttcataa 33808336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 4281611 - 4281569
Alignment:
Q  192 tgttcatatgctgttttcatcttattttcataatttctccaaa 234  Q
    |||||||| | |||||||||||||||||||||| |||||||||    
T  4281611 tgttcataagttgttttcatcttattttcataaattctccaaa 4281569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 27493011 - 27492970
Alignment:
Q  183 ttgtgacattgttcatatgctgttttcatcttattttcataa 224  Q
    ||||||||||||||||| ||| |||||| |||||||||||||    
T  27493011 ttgtgacattgttcataagctattttcaacttattttcataa 27492970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 28769355 - 28769424
Alignment:
Q  203 tgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagtttatagcttgtacgaaaata 271  Q
    |||||||| ||||||| |||||  |||||||| ||||||||||||| || ||||||||| || |||||||    
T  28769355 tgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaata 28769424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 24558917 - 24558829
Alignment:
Q  193 gttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactt 280  Q
    ||||||| ||| | |||| ||||||| ||| |  ||||||| |||||||||||||| |  ||||||||| ||||||||||||| |||||    
T  24558917 gttcataagctatgttcaacttatttacattaagtctccaagatagcttatgaaaacaacttatagcttatacgaaaataatttaactt 24558829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 21367769 - 21367638
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 253  Q
    |||||||| ||||||||||||||   |||| |||||||||||| | |||||||||| ||||||||||||| |||||||| |||||||||||||| |  ||    
T  21367769 actgtttgggagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaactt 21367670  T
Q  254 atagcttgtacgaaaataattgaactttattt 285  Q
    |||  || |||||||| |||| ||||||||||    
T  21367669 atacattatacgaaaacaatttaactttattt 21367638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 26878303 - 26878235
Alignment:
Q  154 aactgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcat 222  Q
    |||||||||||||||||| ||||| | |||| ||||||||||||||  ||||||||| |||||||||||    
T  26878303 aactgtttgagagaacttgtgaaaatagcttatgacattgttcataaactgttttcagcttattttcat 26878235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 285
Target Start/End: Original strand, 34610773 - 34610905
Alignment:
Q  154 aactgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtt 252  Q
    |||| |||| ||||||||||||||   |||| |||||||||||||| |  ||||||| || |||||||||| ||| |||| |||||||||||||  |  |    
T  34610773 aactatttgggagaacttatgaaaactgcttatgacattgttcataagtggttttcagctgattttcataagttcgccaagatagcttatgaaagcaact 34610872  T
Q  253 tatagcttgtacgaaaataattgaactttattt 285  Q
    |||| ||||||| ||||||||| ||||| ||||    
T  34610873 tataacttgtacaaaaataatttaacttcattt 34610905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 35394497 - 35394568
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 256  Q
    |||||||||||||| |||||||||| ||||||||||||| |||| ||| |||||||||||||| ||| ||||    
T  35394497 tgacattgttcataagctgttttcaacttattttcataaattcttcaagatagcttatgaaaacagtgtata 35394568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 45264334 - 45264461
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 253  Q
    |||| ||||||||||||||||||    |||  | ||||||||||| |||||||||| ||||||||||  | || ||||| | |||||||||||| || ||    
T  45264334 actggttgagagaacttatgaaaacaacttacggcattgttcataagctgttttcaccttattttcaccaattttccaagagagcttatgaaaatagctt 45264433  T
Q  254 atagcttgtacgaaaataattgaacttt 281  Q
    |||||||||| ||||| |||| ||||||    
T  45264434 atagcttgtaagaaaacaatttaacttt 45264461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 287
Target Start/End: Original strand, 402510 - 402643
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 253  Q
    |||||||| |||||| |||||||   |||| |||||||||||||| |||||||||| |||| ||||| || |||| ||| |||| |||| |||| || ||    
T  402510 actgtttgggagaacgtatgaaaacagcttatgacattgttcataagctgttttcagcttaatttcacaagttcttcaagatagattataaaaacagctt 402609  T
Q  254 atagcttgtacgaaaataattgaactttatttat 287  Q
    ||| ||| |||||||| |||| || |||| ||||    
T  402610 ataacttatacgaaaacaatttaaatttaattat 402643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 285
Target Start/End: Original strand, 20170707 - 20170807
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatt 284  Q
    |||||||||| | | | |||||| | ||||||| |||||  ||| ||| |||||||| ||||| |||||||||||| |||||||| ||||||||||||||    
T  20170707 tgacattgtttaaaagttgtttttagcttatttgcataagctctacaagatagcttaggaaaacagtttatagcttttacgaaaacaattgaactttatt 20170806  T
Q  285 t 285  Q
    |    
T  20170807 t 20170807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 2719535 - 2719464
Alignment:
Q  190 attgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 260  Q
    ||||| |||| | |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  2719535 attgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagtttatagctt 2719464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 36783339 - 36783433
Alignment:
Q  192 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| |||||||||| ||||| ||||||||| |||||| |||||||||||||| || | |||| || || ||||| ||||  |||||||||    
T  36783339 tgttcataagctgttttcagcttatattcataattgctccaatatagcttatgaaaacagctaatagtttatatgaaaacaattttactttattt 36783433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 37689430 - 37689480
Alignment:
Q  232 aaatagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttta 282  Q
    |||||||||||||||| |||||||||||| || |||||||||| |||||||    
T  37689430 aaatagcttatgaaaatagtttatagcttatatgaaaataatttaacttta 37689480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 45541662 - 45541553
Alignment:
Q  165 agaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgta 263  Q
    |||||||||||||   |||| |||||| ||||||| ||||||||||  ||||| |||||| || ||||| |||||||||||||| |   |||||||| ||    
T  45541662 agaacttatgaaaacagcttatgacat-gttcataagctgttttcaggttattctcataagttatccaagatagcttatgaaaataaactatagcttata 45541564  T
Q  264 cgaaaataatt 274  Q
    |||||||||||    
T  45541563 cgaaaataatt 45541553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 37788916 - 37788831
Alignment:
Q  200 tgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    ||||||||| | || || |||||||  ||| ||||||||||||||||| |  |||||| || |||||||||||||| |||||||||    
T  37788916 tgctgttttaagctgatgttcataaactcttcaaatagcttatgaaaacaacttatagattatacgaaaataattggactttattt 37788831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 50600192 - 50600252
Alignment:
Q  201 gctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 260  Q
    |||||||||| ||||||||||||| |||||||| |||||| ||||||| || |||||||||    
T  50600192 gctgttttcagcttattttcataagttctccaatatagctgatgaaaacagcttatagctt 50600252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 20880574 - 20880452
Alignment:
Q  159 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 257  Q
    |||| |||||| |||||||   |||| ||||| | |||||| ||| |||| | ||||||||||||| |||||||| ||||||| | |||| |||||||||    
T  20880574 tttgggagaacctatgaaaacagcttatgacaattttcataagcttttttgagcttattttcataagttctccaatatagcttttaaaaacagtttatag 20880475  T
Q  258 cttgtacgaaaataattgaactt 280  Q
    | | ||| |||| |||| |||||    
T  20880474 catatacaaaaacaatttaactt 20880452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 34254827 - 34254881
Alignment:
Q  206 tttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagct 259  Q
    ||||| ||||||| ||||| ||||||| ||||||||||||||| |||||||||||    
T  34254827 tttcagcttatttacataagttctccagaatagcttatgaaaatagtttatagct 34254881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 37273188 - 37273135
Alignment:
Q  203 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttat 255  Q
    |||||||| ||||||| ||||| |||||||| |||||||||||||| |||||||    
T  37273188 tgttttcaacttatttccataagttctccaagatagcttatgaaaacagtttat 37273135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 25447247 - 25447343
Alignment:
Q  189 cattgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    ||||||||| | |||||||||| ||| || ||||||    || | |||||||||||||| |||||||||||| ||| |||| |||| || |||||||    
T  25447247 cattgttcacaagctgttttcagctttttctcataagaaatcaagatagcttatgaaaacagtttatagcttatacaaaaacaatttaagtttattt 25447343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 32582816 - 32582740
Alignment:
Q  185 gtgacattgttcatatgctgttttcatcttattttcataatttctcc-aaatagcttatgaaaaaagtttatagctt 260  Q
    ||||||||||||| | | | |||||| ||||||| ||||| |||||| |||||||||||||||| || || ||||||    
T  32582816 gtgacattgttcaaaagattttttcaacttatttccataagttctccaaaatagcttatgaaaacagcttgtagctt 32582740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 7985045 - 7984965
Alignment:
Q  181 gcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 260  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  7985045 gcttgtgacgttgttcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaaaagcttatagctt 7984965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 39105562 - 39105435
Alignment:
Q  159 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 257  Q
    |||| ||||| ||||||||   |||| |||||||||||||| ||| |||| | ||||||||||||| |||||||| |||||||||||||| || ||||||    
T  39105562 tttgggagaatttatgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaagatagcttatgaaaacagattatag 39105463  T
Q  258 cttgtacgaaaataattgaactttattt 285  Q
    ||| |||||||| |||| ||||| ||||    
T  39105462 cttatacgaaaacaatttaacttcattt 39105435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 12425625 - 12425542
Alignment:
Q  203 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| ||||||||||||| |||||||| ||||||| |||||| || ||||||||| |||||||| |||| ||||||||||    
T  12425625 tgttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaactttattt 12425542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 9202742 - 9202847
Alignment:
Q  181 gcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaact 279  Q
    |||| |||||||||||||| ||||||| || ||||||||||||| |||| ||| ||| |||||||||| || |||| |||| || ||||| |||| ||||    
T  9202742 gcttatgacattgttcataagctgtttccagcttattttcataagttcttcaagataacttatgaaaacagcttattgcttatatgaaaacaatttaact 9202841  T
Q  280 ttattt 285  Q
    ||||||    
T  9202842 ttattt 9202847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 6587113 - 6587207
Alignment:
Q  193 gttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattta 286  Q
    ||||||| ||||||| || |||||||||| || |||||||  |||||||||||||| |  ||||||||| |||||||| ||||||| ||||||||    
T  6587113 gttcataagctgtttacagcttattttcacaagttctccactatagcttatgaaaacaacttatagcttatacgaaaacaattgaagtttattta 6587207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 28777093 - 28776980
Alignment:
Q  157 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttat 255  Q
    |||||| |||||||||| ||| | | || |||||||||||| |  || |||| ||||||||||||| | |||||||| |||||||||||||| || ||||    
T  28777093 tgtttgtgagaacttataaaaatagtttatgacattgttcaaaaactatttttatcttattttcattagttctccaagatagcttatgaaaacagcttat 28776994  T
Q  256 agcttgtacgaaaa 269  Q
    ||| | ||||||||    
T  28776993 agcctatacgaaaa 28776980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 4014429 - 4014485
Alignment:
Q  192 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    |||||||| |||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  4014429 tgttcataagctgttttcagcttattttcataagttctccaagatagcttatgaaaa 4014485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 42100413 - 42100321
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctc-caaatagcttatgaaa 246  Q
    ||||| ||||||||||| ||||| | |||| |||||| ||||| | | |||||||||||||||||||||| |||||  |||||||||| ||||    
T  42100413 actgtgtgagagaacttgtgaaaatagcttatgacatagttcaaaaggtgttttcatcttattttcataagttctcaaaaatagcttacgaaa 42100321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 7808607 - 7808540
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcat 222  Q
    |||||||| |||| ||||||||| | |||| | |||||||||||| |||||||||| |||||||||||    
T  7808607 actgtttgggagagcttatgaaaatagcttataacattgttcataagctgttttcagcttattttcat 7808540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 17258856 - 17258982
Alignment:
Q  159 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatag 257  Q
    |||| |||||| ||||||| | |||| |||||| ||||||| |||||||||| |||||||||||||  ||| ||  |||| ||||||||| || |||| |    
T  17258856 tttgggagaacctatgaaaatagcttatgacat-gttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttattg 17258954  T
Q  258 cttgtacgaaaataattgaactttattt 285  Q
     ||||||||||||| ||  |||||||||    
T  17258955 attgtacgaaaatagtttgactttattt 17258982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 36639623 - 36639509
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 253  Q
    |||||||||||||||||| |||| | |||| |||| | || |||| | ||||||| ||||||||||||||  ||| ||| |||||||||||||| ||| |    
T  36639623 actgtttgagagaacttacgaaaattgcttatgacgt-gtccataagttgttttcctcttattttcataagctcttcaagatagcttatgaaaacagtct 36639525  T
Q  254 atagcttgtacgaaaa 269  Q
    ||| |||||| |||||    
T  36639524 ataacttgtatgaaaa 36639509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 1619144 - 1619062
Alignment:
Q  202 ctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatt 284  Q
    ||||||||| || |||||||||   ||||||||| ||||||||||| || ||||||||| |||| ||| |||| |||||||||    
T  1619144 ctgttttcagctgattttcatatgctctccaaatggcttatgaaaacagcttatagcttatacggaaagaatttaactttatt 1619062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 7319457 - 7319379
Alignment:
Q  206 tttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttat 283  Q
    ||||| |||||||| |||| |||||||| |||||||| ||||| |||||||||||| || ||||| |||| ||||||||    
T  7319457 tttcagcttatttttataagttctccaagatagcttacgaaaacagtttatagcttatatgaaaacaatttaactttat 7319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 29925940 - 29925854
Alignment:
Q  158 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatg 243  Q
    ||||| ||||||||||||||   |||| ||||| ||||||| || | |||||| ||||||||||||| |||||||| ||||||||||    
T  29925940 gtttgggagaacttatgaaaacagcttatgacaatgttcatgtgtttttttcaacttattttcataagttctccaatatagcttatg 29925854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 34160807 - 34160713
Alignment:
Q  181 gcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataatt 274  Q
    |||||||||| ||||||||  ||||||||| ||||||||||||| |||||||| ||| || ||||||| || |||||  || |||||||| ||||    
T  34160807 gcttgtgacactgttcataaactgttttcagcttattttcataagttctccaagatatctaatgaaaatagcttataaattttacgaaaagaatt 34160713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 7319011 - 7319078
Alignment:
Q  190 attgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 256  Q
    ||||| |||| | |||| ||| ||||||||||||| |||||||| |||||||||||||| ||||||||    
T  7319011 attgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagtttata 7319078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 7674702 - 7674619
Alignment:
Q  203 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| |||||||||| || |||||||| |||||||||||||| | ||||| |||| || ||||| |||| || |||||||    
T  7674702 tgttttcagcttattttcacaaattctccaagatagcttatgaaaacattttatggcttataagaaaacaatttaaatttattt 7674619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 37611186 - 37611276
Alignment:
Q  157 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    ||||||||||| |||||||||    ||||||||| |||||||| ||||||||||  |||||| |||||  ||||||| ||||||||||||||    
T  37611186 tgtttgagagagcttatgaaaacaacttgtgaca-tgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaa 37611276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 37787916 - 37788006
Alignment:
Q  157 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    ||||||||||| |||||||||    ||||||||| |||||||| ||||||||||  |||||| |||||  ||||||| ||||||||||||||    
T  37787916 tgtttgagagagcttatgaaaacaacttgtgaca-tgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaa 37788006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 17368770 - 17368685
Alignment:
Q  162 gagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    ||||||||||||||||    ||| |||||| |||||||||| ||||||| ||||||| |||||  ||||||| ||||||||||||||    
T  17368770 gagagaacttatgaaaacaacttatgacat-gttcatatgcagttttcagcttatttccataacctctccaagatagcttatgaaaa 17368685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 10640053 - 10639976
Alignment:
Q  157 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaa 234  Q
    |||||| ||||||||||||||   |||| ||||||| |||||| ||| |||  | ||||||||||||| |||||||||    
T  10640053 tgtttgggagaacttatgaaaacagcttatgacatttttcataagctttttctagcttattttcataagttctccaaa 10639976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 25461321 - 25461390
Alignment:
Q  192 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 260  Q
    |||||||  |||||||||| ||||||||||||| | | |||| |||| ||||||||| ||||||||||||    
T  25461321 tgttcattagctgttttcagcttattttcataaatacgccaagataggttatgaaaacagtttatagctt 25461390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 2563254 - 2563186
Alignment:
Q  213 ttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactt 280  Q
    |||||||||||   ||||||| ||||||| |||||| |||||||||||| ||| |||| ||||||||||    
T  2563254 ttattttcatagactctccaagatagcttgtgaaaatagtttatagcttatacaaaaacaattgaactt 2563186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 6096623 - 6096575
Alignment:
Q  181 gcttgtgacattgttcatatgctgttttcatcttattttcataatttct 229  Q
    ||||||||||||||||||| |||||| ||| || |||||||||| ||||    
T  6096623 gcttgtgacattgttcataagctgttctcagctcattttcataaattct 6096575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 10272447 - 10272519
Alignment:
Q  203 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataatt 274  Q
    |||||||| |||||||||||||  ||||||| || ||||||||||| |  ||||||||| |||||||| ||||    
T  10272447 tgttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaacaatt 10272519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 18637039 - 18637103
Alignment:
Q  206 tttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaa 269  Q
    ||||| |||||||||||||| ||| ||| |||||| ||||||| || ||||||||| ||||||||    
T  18637039 tttcagcttattttcataatatcttcaagatagctaatgaaaatagcttatagcttatacgaaaa 18637103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 32408640 - 32408680
Alignment:
Q  234 atagcttatgaaaaaagtttatagcttgtacgaaaataatt 274  Q
    |||||||||||||| |||||||||||| || ||||||||||    
T  32408640 atagcttatgaaaatagtttatagcttatatgaaaataatt 32408680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 35446126 - 35446026
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatt 284  Q
    ||||||| ||| || ||| |||||| ||||||||||||| ||||||| ||  |||||||| || || ||||||| | ||| |||| |||| |||||||||    
T  35446126 tgacatttttcgtaagcttttttcagcttattttcataagttctccacaaatgcttatgagaagaggttatagcgtatacaaaaacaatttaactttatt 35446027  T
Q  285 t 285  Q
    |    
T  35446026 t 35446026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 40119867 - 40119963
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttt 281  Q
    |||||||||||| | |||||| | |  ||||||||| || || ||||| || ||||||||||| || ||||||||| |||| |||||||| ||||||    
T  40119867 tgacattgttcacaagctgttcttagattattttcacaagttatccaagatcgcttatgaaaacaggttatagcttatacggaaataattcaacttt 40119963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 2735171 - 2735040
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 253  Q
    ||||||||||| |||||||||||  ||||| ||||||| |||||| |||||||||  ||||||||||||| || | ||| || ||||||||||| || ||    
T  2735171 actgtttgagataacttatgaaaacggcttatgacatttttcataagctgttttcggcttattttcataagttgttcaagattgcttatgaaaacagctt 2735072  T
Q  254 atagcttgtacgaaaataattgaactttattt 285  Q
    |||| || ||| ||||||||| ||||||||||    
T  2735071 atagattatacaaaaataatttaactttattt 2735040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 9093528 - 9093655
Alignment:
Q  159 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 257  Q
    |||| |||| ||||||||| | |||| |||||||||| |||  ||||||||| ||||||||| ||| ||||| || | |||||||||||| || ||||||    
T  9093528 tttgtgagagcttatgaaaatagcttatgacattgttaataacctgttttcagcttattttcttaagttctctaagacagcttatgaaaacagcttatag 9093627  T
Q  258 cttgtacgaaaataattgaactttattt 285  Q
    ||| |||||||| |||| ||||||||||    
T  9093628 cttatacgaaaacaatttaactttattt 9093655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 31624181 - 31624086
Alignment:
Q  165 agaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 260  Q
    |||||||||||||   |||| |||||| ||||||| |||||||||| |||||||||||||||||||||| ||||| |||||||| || |||||||||    
T  31624181 agaacttatgaaaacagcttatgacat-gttcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatagctt 31624086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 13907684 - 13907557
Alignment:
Q  158 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 256  Q
    ||||||||||| ||||||||   |||| |||||||||||| | | | ||||||  ||||||||||||||||||||| || ||||||||||| |  |||||    
T  13907684 gtttgagagaatttatgaaaacagcttctgacattgttcacaagttattttcagtttattttcataatttctccaagatggcttatgaaaacaacttata 13907585  T
Q  257 gcttgtacgaaaataattgaactttatt 284  Q
    | || ||||||| ||| | |||||||||    
T  13907584 ggttatacgaaagtaaattaactttatt 13907557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 9912159 - 9912237
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa 233  Q
    |||||||  ||||||||||||||   |||| |||||||||||||| |||||||| | ||||||||||||| ||||||||    
T  9912159 actgtttcggagaacttatgaaaccagcttatgacattgttcataagctgttttgagcttattttcataagttctccaa 9912237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 31813259 - 31813174
Alignment:
Q  159 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatg 243  Q
    |||| |||||||||||||| | |||| ||| |||||||||| || ||||||| ||||||||||||  |||||||| ||||||||||    
T  31813259 tttgggagaacttatgaaaattgcttatgagattgttcataagccgttttcagcttattttcatatgttctccaagatagcttatg 31813174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 769203 - 769110
Alignment:
Q  192 tgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| |||||||||| |||| |||| ||| | ||| |  ||||||||||||| |||||||||||| ||| |||| || | ||||||||||    
T  769203 tgttcataagctgttttcaacttactttcttaagtcctcaagttagcttatgaaaacagtttatagcttatacaaaaaaaaattaactttattt 769110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 34430455 - 34430522
Alignment:
Q  181 gcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    |||| |||||||  ||||| ||| |||||| ||||||||||||| |||||||| ||||||||||||||    
T  34430455 gcttatgacatttatcataagcttttttcagcttattttcataacttctccaagatagcttatgaaaa 34430522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 8364990 - 8365076
Alignment:
Q  201 gctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattta 286  Q
    |||||||||| ||||||||||| | ||| |||  |||||||||||||| |||||||| ||| ||  |||| |||||||||| |||||    
T  8364990 gctgttttcagcttattttcatcagttcaccatgatagcttatgaaaacagtttataacttatataaaaacaattgaacttaattta 8365076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 835265 - 835310
Alignment:
Q  203 tgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||    
T  835265 tgttttcagcttattttcataagttctccaagatagcttatgaaaa 835310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 2455090 - 2454991
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttat--gaaaaaagt 251  Q
    |||||||| |||||||| |||||    ||| ||||||||||||||  ||||||||| ||||||||||| | |||||||| ||| |||||  |||||||||    
T  2455090 actgtttgggagaacttctgaaaa---cttatgacattgttcataacctgttttcagcttattttcattagttctccaacataacttatacgaaaaaagt 2454994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 9109252 - 9109325
Alignment:
Q  188 acattgttcatatgctgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagtttatagctt 260  Q
    |||||||||||| | |||||||| ||||||||||||  ||||||||| ||| | ||||||| || |||||||||    
T  9109252 acattgttcataagttgttttcaccttattttcataggttctccaaattagttaatgaaaacagcttatagctt 9109325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 1625998 - 1625871
Alignment:
Q  159 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 257  Q
    ||||||||||||||||||| | |||| ||||| |||||||| | |||||||| || |||||| ||| |||||||| |||||||||||||| |  |||||     
T  1625998 tttgagagaacttatgaaagtagcttatgacaatgttcataagatgttttcagctgattttcgtaagttctccaagatagcttatgaaaacaacttataa 1625899  T
Q  258 cttgtacgaaaataattgaactttattt 285  Q
    ||| |||||||| |||| ||||||||||    
T  1625898 cttatacgaaaacaatttaactttattt 1625871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 18066218 - 18066099
Alignment:
Q  167 aacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacg 265  Q
    |||||||||||   |||| |||||||| ||||| ||| |||||| ||||||||| ||| |||||||| |||||||||||||| || ||||||||| || |    
T  18066218 aacttatgaaaacagcttatgacattgctcataagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatg 18066119  T
Q  266 aaaataattgaactttattt 285  Q
    |||| |||| ||||||||||    
T  18066118 aaaacaatttaactttattt 18066099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 26626975 - 26626848
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 253  Q
    ||||| || ||||||||| |||| | |||| ||||||||||||||  |||||||||  |||||||||||| |||| ||| |||||||||||||| || ||    
T  26626975 actgtatgggagaacttacgaaaatagcttatgacattgttcataatctgttttcaggttattttcataagttctgcaagatagcttatgaaaacagctt 26626876  T
Q  254 atagcttgtacgaaaataattgaacttt 281  Q
     |||||| |||||||| |||| ||||||    
T  26626875 ctagcttatacgaaaacaatttaacttt 26626848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 40682365 - 40682455
Alignment:
Q  157 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaa 247  Q
    |||||| |||||||| | ||| | |||| |||||||||||||| | |||||||| ||||||||||||| ||||| | ||| ||||||||||    
T  40682365 tgtttgggagaacttgttaaaatagcttatgacattgttcataagttgttttcaacttattttcataagttctcaagatatcttatgaaaa 40682455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 8017477 - 8017409
Alignment:
Q  214 tattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttt 281  Q
    ||||||||||| |||||||| |||||||||||||| |||||| ||||| || |||||||||| ||||||    
T  8017477 tattttcataagttctccaagatagcttatgaaaacagtttacagcttatatgaaaataatttaacttt 8017409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 273
Target Start/End: Complemental strand, 2142802 - 2142636
Alignment:
Q  109 ttggattgacttatttaaatttatcaacttgcgtaagttctatcgaactgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgtttt 208  Q
    |||| ||||||||||| | |||||| || ||| |||||| |||   |||||||| ||||||||||||||     |||||||| |||||||  ||||||||    
T  2142802 ttggtttgacttatttgagtttatctacatgcataagttttatgagactgtttgggagaacttatgaaaacaagttgtgacaatgttcattagctgtttt 2142703  T
Q  209 catcttattttcataatttctcc--aaatagcttatgaaaaaagtttatagcttgtacgaaaataat 273  Q
     | ||||||||||||| ||||||  | |||  ||||||||| |  ||||||||| ||| ||||||||    
T  2142702 tagcttattttcataaattctcccaagataaattatgaaaacaacttatagcttatacaaaaataat 2142636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 750762 - 750680
Alignment:
Q  165 agaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaa 246  Q
    |||||||||||||   |||  |||||||||||||| |||||||| | ||||||| ||||| |||||||| |||||||||||||    
T  750762 agaacttatgaaaagagctaatgacattgttcataagctgttttgagcttatttgcataagttctccaagatagcttatgaaa 750680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 680558 - 680485
Alignment:
Q  202 ctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataatt 274  Q
    ||||||||| |||||||||| || |||| ||| |||||||||||||| || ||||||||| |||||||| ||||    
T  680558 ctgttttcagcttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttatacgaaaacaatt 680485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 12464491 - 12464572
Alignment:
Q  205 ttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||| |||||||||| || |||||||| |||||||||||||| || ||||||| | ||| |||| |||| ||||||||||    
T  12464491 ttttcagcttattttcacaagttctccaagatagcttatgaaaatagcttatagcatatacaaaaacaatttaactttattt 12464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 26143608 - 26143740
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 253  Q
    |||||||| ||||||||| ||||    ||| || ||||||||| | | | |||||| ||||||||||||| ||||||||  ||||||||||||| || ||    
T  26143608 actgtttgggagaacttacgaaaacaacttatgtcattgttcacaggttattttcagcttattttcataagttctccaagttagcttatgaaaacagctt 26143707  T
Q  254 atag-cttgtacgaaaataattgaactttattt 285  Q
    | ||  || |||||| |||||||||||||||||    
T  26143708 acagttttttacgaatataattgaactttattt 26143740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 40279476 - 40279416
Alignment:
Q  188 acattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    ||||||| ||||  ||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  40279476 acattgtccataaactgttttcaacttattttcataagttctccaatatagcttatgaaaa 40279416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 16451217 - 16451118
Alignment:
Q  158 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 256  Q
    ||||| ||||||||||||||    ||| |||||||||||||  |||||||||| ||||||||||  | |||||||| |||||||| ||||| || |||||    
T  16451217 gtttgggagaacttatgaaaacaacttatgacattgttcatgagctgttttcagcttattttcacgagttctccaagatagcttacgaaaacagcttata 16451118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 18962042 - 18962137
Alignment:
Q  192 tgttcatatgctgttttcatctt-attttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    ||||||| ||||||||||| ||| |||| |||| | ||||||  |||||||||||||| |||||||||||| || ||||| | || ||||||||||    
T  18962042 tgttcatgtgctgttttcagctttatttccatagtctctccatgatagcttatgaaaatagtttatagcttatatgaaaacagtttaactttattt 18962137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 28039336 - 28039431
Alignment:
Q  191 ttgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    ||||||||| |||||||||| ||||||| ||||| || ||||| | ||||||||||||  | |||||| || || ||||| ||||| |||||||||    
T  28039336 ttgttcataagctgttttcagcttatttccataacttttccaagaaagcttatgaaaattgcttatagtttatatgaaaacaattggactttattt 28039431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 40279335 - 40279276
Alignment:
Q  189 cattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    |||||||||||  ||||||||| || |||||||||| |||||||| ||||||||||||||    
T  40279335 cattgttcataaactgttttcagctaattttcataagttctccaatatagcttatgaaaa 40279276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 40279405 - 40279346
Alignment:
Q  189 cattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    |||||||||||  ||||||||| || |||||||||| |||||||| ||||||||||||||    
T  40279405 cattgttcataaactgttttcagctaattttcataagttctccaatatagcttatgaaaa 40279346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 7928299 - 7928345
Alignment:
Q  187 gacattgttcatatgctgttttcatcttattttcataatttctccaa 233  Q
    ||||||||||||| | |||||||| ||||||||||||| ||||||||    
T  7928299 gacattgttcataagttgttttcagcttattttcataagttctccaa 7928345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 12313178 - 12313272
Alignment:
Q  192 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| | || ||||| |||||||||||||  ||||||| |||||||||| ||| | ||| ||||||  || ||||||||| ||||||||||    
T  12313178 tgttcataagttgatttcaccttattttcataagctctccaagatagcttatgtaaacaatttgtagcttaaacaaaaataatttaactttattt 12313272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 16398185 - 16398123
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    |||||||| || || |||||||||| ||||||||||||| |||||||| ||| ||||||||||    
T  16398185 tgacattgctcgtaagctgttttcagcttattttcataagttctccaacataacttatgaaaa 16398123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 43868289 - 43868331
Alignment:
Q  203 tgttttcatcttattttcataatttctccaaatagcttatgaa 245  Q
    |||||| | ||||||||||||| ||||||||||||||||||||    
T  43868289 tgtttttagcttattttcataagttctccaaatagcttatgaa 43868331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 45229610 - 45229520
Alignment:
Q  158 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    ||||| ||||||||||||||    ||| ||||||| |||||  ||| |||||| ||||||||||||| ||||| || ||||||||||||||    
T  45229610 gtttgggagaacttatgaaaagaccttatgacatttttcattagcttttttcagcttattttcataagttctcgaagatagcttatgaaaa 45229520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 10646297 - 10646350
Alignment:
Q  195 tcatatgctgttttcatcttattttcataatttctc-caaatagcttatgaaaa 247  Q
    ||||| || ||||||||||||||||||||| |||||  ||||||||||||||||    
T  10646297 tcataagcagttttcatcttattttcataagttctctaaaatagcttatgaaaa 10646350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 15978039 - 15977994
Alignment:
Q  203 tgttttcatcttattttcataatttctcc-aaatagcttatgaaaa 247  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||    
T  15978039 tgttttcagcttattttcataatctctccaaaatagcttatgaaaa 15977994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 33319830 - 33319883
Alignment:
Q  205 ttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 257  Q
    |||||| ||||||||||||| |||||||| |||| ||||||||| |||||||||    
T  33319830 ttttcagcttattttcataagttctccaagatagtttatgaaaacagtttatag 33319883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 35379020 - 35379077
Alignment:
Q  191 ttgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    ||||||||| | |||||||| |||||||||||||  ||||||| ||||||||||||||    
T  35379020 ttgttcataagttgttttcagcttattttcataagctctccaagatagcttatgaaaa 35379077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 36043974 - 36043881
Alignment:
Q  187 gacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaact 279  Q
    ||||||||||||| |||||||| | || | ||||||||  ||||||| ||| || ||||| | |||||||||||| |||||||| |||| ||||    
T  36043974 gacattgttcataagctgtttttagctcaatttcataagctctccaagataactaatgaagacagtttatagcttatacgaaaacaatttaact 36043881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 40279265 - 40279168
Alignment:
Q  189 cattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||||||  || |||||| || |||||||||| |||||||| |||||||||||||| |  ||||| ||| ||| |||| |||| ||||| ||||    
T  40279265 cattgttcataaactattttcagctaattttcataagttctccaacatagcttatgaaaacaacttatatcttataccaaaacaatttaacttcattt 40279168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 3611297 - 3611197
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatt 284  Q
    ||||||| ||||||  ||||||| | ||||||||||||| |||||||| ||||||| |||||| ||| ||||   | ||| |||| |||| |||||||||    
T  3611297 tgacattattcataaactgtttttagcttattttcataagttctccaagatagcttgtgaaaacagtctataaactatacaaaaacaatttaactttatt 3611198  T
Q  285 t 285  Q
    |    
T  3611197 t 3611197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 9174886 - 9174814
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 257  Q
    |||||||||||||| ||| |||||| |||||||||||||  |||  || |||||||||||||| || ||||||    
T  9174886 tgacattgttcataagctattttcagcttattttcataagctctgtaagatagcttatgaaaacagcttatag 9174814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 21788385 - 21788341
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctc 230  Q
    ||||||||||||| || |||||||| ||||||||||||| |||||    
T  21788385 tgacattgttcatttgttgttttcaacttattttcataagttctc 21788341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 43511151 - 43511111
Alignment:
Q  191 ttgttcatatgctgttttcatcttattttcataatttctcc 231  Q
    ||||||||| |||||||||| ||||||||||||| ||||||    
T  43511151 ttgttcataagctgttttcagcttattttcataagttctcc 43511111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 20526548 - 20526417
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagttt 253  Q
    |||||||||||||||||||||||   | || | ||||| ||| || |||||||| | ||||||||||| | ||||||||| ||||||||||||| || ||    
T  20526548 actgtttgagagaacttatgaaaacagtttatcacatttttcgtaagctgtttttagcttattttcattagttctccaaaatagcttatgaaaacagctt 20526449  T
Q  254 atagcttgtacgaaaataattgaactttattt 285  Q
    ||||| ||||| || |||||| ||||||||||    
T  20526448 atagcatgtacaaacataatttaactttattt 20526417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 285
Target Start/End: Complemental strand, 39968013 - 39967891
Alignment:
Q  164 gagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctc-caaatagcttatgaaaaaagtttatagcttgt 262  Q
    ||||||||||||||   |||| || ||||||||||| |||||||||| ||||||||||| | ||||| || |||||||||||||| |  |||||||| ||    
T  39968013 gagaacttatgaaaacagcttatggcattgttcataagctgttttcaacttattttcattagttctctcagatagcttatgaaaacaacttatagctagt 39967914  T
Q  263 acgaaaataattgaactttattt 285  Q
    ||||||| |||| || |||||||    
T  39967913 acgaaaacaatttaagtttattt 39967891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 36517650 - 36517579
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 256  Q
    |||||||||||||| ||| ||||||  ||||||||||||||||||||| |||||||||||||| ||||||||    
T  36517650 tgacattgttcataagctattttcagtttattttcataatttctccaagatagcttatgaaaatagtttata 36517579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 39393603 - 39393665
Alignment:
Q  212 cttattttcataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataatt 274  Q
    ||||||||||||| ||||||||||||||||||||||||  ||||||||  ||| |||||||||    
T  39393603 cttattttcataagttctccaaatagcttatgaaaaaaacttatagctcatacaaaaataatt 39393665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 282
Target Start/End: Complemental strand, 33678927 - 33678754
Alignment:
Q  110 tggattgacttatttaaatttatcaacttgcgtaagttctatcgaactgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttc 209  Q
    ||||||| |||||||||| ||||| |||||| |||||| | |   ||  |||| ||||||||||||||    ||| | |||||||||||  | |||||||    
T  33678927 tggattggcttatttaaacttatctacttgcataagttttgtgagacaatttgggagaacttatgaaaacaacttataacattgttcatgagatgttttc 33678828  T
Q  210 atcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttta 282  Q
    | |||||||||| || || ||||| |||||||||||||| || ||||||||| ||| ||||  ||| |||||||    
T  33678827 aacttattttcacaagttttccaagatagcttatgaaaacagcttatagcttttacaaaaaccatttaacttta 33678754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 40688993 - 40689085
Alignment:
Q  194 ttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||| |||||||| | ||||||||||||| || ||||  |||||||||||| | || ||||||||| || |||||||||| ||||||||||    
T  40688993 ttcataagctgttttgagcttattttcataagttatccaggatagcttatgaacacagcttatagcttatatgaaaataatttaactttattt 40689085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 39907903 - 39907774
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 253  Q
    ||||||||||||||||| | ||||  |||| || || |||||||  |||||||||| ||||||||||| | ||||| || |||| ||||||||| |||||    
T  39907903 actgtttgagagaacttgtaaaatgagcttatg-ca-tgttcattagctgttttcagcttattttcattagttctctaagatagtttatgaaaacagttt 39907806  T
Q  254 atagcttgtacgaaaataattgaactttattt 285  Q
    ||||||| ||| |||| |||| ||| ||||||    
T  39907805 atagcttatacaaaaacaatttaaccttattt 39907774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 44822013 - 44821930
Alignment:
Q  203 tgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||| || ||||| ||| ||| |||| ||||  |||||||||    
T  44822013 tgttttcaacttattttcataagttctccagaatagcttatgaaaacagcttataacttatacaaaaacaatttgactttattt 44821930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 20526897 - 20527011
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagttt 253  Q
    |||||||||||||||| ||||||   |||| ||| |||||| ||| | | |||||| ||||||||||||| |||| ||  |||||||||||||| || ||    
T  20526897 actgtttgagagaactgatgaaaacagcttatgagattgtttataagatcttttcagcttattttcataagttctacactatagcttatgaaaacagctt 20526996  T
Q  254 atagcttgtacgaaa 268  Q
     |||||| |||||||    
T  20526997 gtagcttttacgaaa 20527011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 25596087 - 25596032
Alignment:
Q  203 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 257  Q
    |||||||| |||||||||||||  ||||||| |||||||||||||| |||||||||    
T  25596087 tgttttcaacttattttcataagctctccaagatagcttatgaaaagagtttatag 25596032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 34036009 - 34035926
Alignment:
Q  165 agaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    ||||||||||||| |  ||| |||||||||||||| | |||||||| |||||||||  || ||||| || ||||||||||||||    
T  34036009 agaacttatgaaaataacttatgacattgttcataagttgttttcaacttattttcgcaagttctctaagatagcttatgaaaa 34035926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 17248654 - 17248530
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaaaagttta 254  Q
    |||||||| |||||||||| |||   |||| | |||||||||||| |||| ||| | ||||||||||||| |||| | || | |||||||||| || |||    
T  17248654 actgtttgggagaacttataaaaacagcttataacattgttcataagctgattt-accttattttcataagttct-ctaagatcttatgaaaagagctta 17248557  T
Q  255 tagcttgtacgaaaataattgaacttt 281  Q
    |||||| ||| |||| |||| ||||||    
T  17248556 tagcttatacaaaaacaatttaacttt 17248530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 44989645 - 44989739
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgtttt-catcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    |||||||| || |||||||||||    ||| |||||||||||| | |||||||| || |||||||||||||||||| ||| ||| ||||||||||    
T  44989645 actgtttgggaaaacttatgaaaacaacttctgacattgttcacaagctgttttgcagcttattttcataatttctacaagatatcttatgaaaa 44989739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 47177681 - 47177611
Alignment:
Q  212 cttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttt 281  Q
    ||||||||||||| |||||||| ||||||| |||||| || ||||||||| || ||||| |||| ||||||    
T  47177681 cttattttcataaattctccaagatagcttttgaaaacagcttatagcttatatgaaaacaatttaacttt 47177611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 12110404 - 12110331
Alignment:
Q  213 ttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||||||| |||| ||| |||||||||||||| || ||||||||| ||| |||| ||||  |||||||||    
T  12110404 ttattttcataagttcttcaagatagcttatgaaaacagcttatagcttataccaaaacaatttgactttattt 12110331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 22283758 - 22283843
Alignment:
Q  201 gctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||||| ||||||| ||||| ||||| || || | ||||||||| |||||||||||  ||| |||| |||| ||||||||||    
T  22283758 gctgttttcagcttatttccataagttctctaagatggtttatgaaaacagtttatagctgatacaaaaacaatttaactttattt 22283843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 43648292 - 43648227
Alignment:
Q  205 ttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaa 269  Q
    |||||| |||||||||||| ||||||||| |||||||||||||| || ||||| | | ||||||||    
T  43648292 ttttcaacttattttcatattttctccaagatagcttatgaaaacagcttatatcatatacgaaaa 43648227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 285
Target Start/End: Complemental strand, 1706721 - 1706593
Alignment:
Q  158 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 256  Q
    ||||||||||| ||||||||   |||| || ||||||||||| ||| ||| || |||||||||||||  | ||||| |||| ||||||||| || |||||    
T  1706721 gtttgagagaaattatgaaaacagcttatggcattgttcataagctatttccaacttattttcataagctgtccaagatagtttatgaaaacagcttata 1706622  T
Q  257 gcttgtacgaaaataattgaactttattt 285  Q
    |||| |||||||| |||||||| ||||||    
T  1706621 gcttctacgaaaacaattgaacattattt 1706593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 22662112 - 22661980
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaa-aaaagtt 252  Q
    |||||||| | |||||||||||||  | || |||||||| ||||  | |||||||  |||||| |||||| |||||||  |||||||||||| ||||| |    
T  22662112 actgtttgggggaacttatgaaatcagtttatgacattgatcatgagttgttttctgcttattgtcataagttctccatgatagcttatgaagaaaagct 22662013  T
Q  253 tatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| |||| ||| |||||||||||||||    
T  22662012 tatagcttatacgtaaaaaattgaactttattt 22661980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 22666591 - 22666459
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaa-gtt 252  Q
    |||||||| | |||||||||||||  | || |||||||| ||||  | |||||||  |||||| |||||| |||||||  |||||||||||||||| | |    
T  22666591 actgtttgggggaacttatgaaatcagtttatgacattgatcatgagttgttttctgcttattgtcataagttctccatgatagcttatgaaaaaaagct 22666492  T
Q  253 tatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| |||| ||| |||||||||||||||    
T  22666491 tatagcttatacgtaaaaaattgaactttattt 22666459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 28300315 - 28300398
Alignment:
Q  203 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| |||||||||||||  ||| ||| ||||| |||||||| |||||||||||| ||| |||| |||| ||||||||||    
T  28300315 tgttttcaacttattttcataagctcttcaagatagcctatgaaaatagtttatagcttatacaaaaacaatttaactttattt 28300398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 51630165 - 51630082
Alignment:
Q  203 tgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| ||||||||||||| |||| ||| |||||||||||||| || ||||||||| ||  |||| |||| ||||||||||    
T  51630165 tgttttcagcttattttcataaattcttcaagatagcttatgaaaatagcttatagcttatatcaaaacaatttaactttattt 51630082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 55414414 - 55414492
Alignment:
Q  181 gcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagc 258  Q
    |||| ||||||| |||||| ||| |||||| ||||||||||||| |||||||| ||| |||||||||| | ||||||||    
T  55414414 gcttatgacatttttcataagcttttttcaacttattttcataagttctccaagataacttatgaaaacaatttatagc 55414492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 3155671 - 3155574
Alignment:
Q  189 cattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| ||  ||||||||| ||||||||||| | |||| ||| |||| ||||||||| || || |||||||||| |||| |||| ||||||||||    
T  3155671 cattgttcgtaaactgttttcagcttattttcattagttcttcaagatagtttatgaaaacagcttgtagcttgtacaaaaacaatttaactttattt 3155574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 17822842 - 17822926
Alignment:
Q  164 gagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    |||||| |||||||   |||| ||||||| |||||| ||| |||| | ||||||||||||| |||||||| ||||||||||||||    
T  17822842 gagaacatatgaaaacagcttatgacatttttcataagctttttttagcttattttcataagttctccaagatagcttatgaaaa 17822926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 24169361 - 24169261
Alignment:
Q  159 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 257  Q
    ||||||||||||| | ||| | |||| ||||||| |||||| | | |||||| |||||||||||||  ||||||| ||||||| |||||| | |||||||    
T  24169361 tttgagagaacttttaaaaatagcttatgacatttttcataagattttttcaacttattttcataagctctccaagatagcttgtgaaaacattttatag 24169262  T
Q  258 c 258  Q
    |    
T  24169261 c 24169261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 282
Target Start/End: Complemental strand, 40174633 - 40174537
Alignment:
Q  187 gacattgttcatatgctgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagtttatagcttgtacgaaaataattgaacttta 282  Q
    |||||||| ||||  ||||||||| |||||| ||| || ||||||||  ||||||||||||| || ||||||||| || ||||| |||| |||||||    
T  40174633 gacattgtccataaactgttttcaacttattatcacaagttctccaatgtagcttatgaaaacagcttatagcttttatgaaaacaatttaacttta 40174537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 48719362 - 48719428
Alignment:
Q  157 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataa 224  Q
    |||||||| |||||||||||| ||| || |||||| |||| || |||||||||| |||||||||||||    
T  48719362 tgtttgagggaacttatgaaaatggtttatgacat-gttcgtaagctgttttcagcttattttcataa 48719428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 825505 - 825551
Alignment:
Q  202 ctgttttcatcttattttcataatttctcc-aaatagcttatgaaaa 247  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||    
T  825505 ctgttttcagcttattttcataagttctccaaaatagcttatgaaaa 825551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 35571636 - 35571714
Alignment:
Q  192 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaa 269  Q
    |||||||  |||| ||||| |||||||||| || ||||| || |||||||||||||| || ||||||||| ||||||||    
T  35571636 tgttcatgagctggtttcaacttattttcacaagttctctaagatagcttatgaaaacagcttatagcttatacgaaaa 35571714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 43932489 - 43932431
Alignment:
Q  203 tgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagctt 260  Q
    ||||||||||||||||||| || |||| || |||| |||||||||| ||||||||||||    
T  43932489 tgttttcatcttattttcacaagttcttcagaataacttatgaaaatagtttatagctt 43932431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 24091481 - 24091433
Alignment:
Q  238 cttatgaaaaaagtttatagcttgtacgaaaataattgaactttattta 286  Q
    |||||||||| |||||||||||| || ||||||||||  ||||||||||    
T  24091481 cttatgaaaacagtttatagcttatatgaaaataatttgactttattta 24091433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 49939929 - 49939981
Alignment:
Q  165 agaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttatt 217  Q
    |||||||||||||   |||| |||||||||||||| |||||||||| ||||||    
T  49939929 agaacttatgaaaagagcttatgacattgttcataagctgttttcagcttatt 49939981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 54392836 - 54392920
Alignment:
Q  204 gttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatttat 287  Q
    ||||||| |||||||||| ||||||||||| ||| ||||| |||| || | ||||| | ||| |||| |||| ||||||||||||    
T  54392836 gttttcaacttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatacaaaaacaatttaactttatttat 54392920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 286
Target Start/End: Complemental strand, 4576906 - 4576775
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagttt 253  Q
    ||||||||||| ||||||||||| | | || |||||| ||| ||| | ||| |||| ||||||||||||| || | ||| |||||||||||||| || ||    
T  4576906 actgtttgagacaacttatgaaaatagtttatgacat-gtttataagttgtgttcagcttattttcataagttattcaatatagcttatgaaaacagctt 4576808  T
Q  254 atagcttgtacgaaaataattgaactttattta 286  Q
    ||| ||||||| |||||| || |||||||||||    
T  4576807 ataacttgtacaaaaatattttaactttattta 4576775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 45975759 - 45975675
Alignment:
Q  188 acattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaata 271  Q
    ||||| |||||| |||||||||| ||||||||||||| |||||||| |||||||||||||| || || |||||| ||| ||||||    
T  45975759 acattattcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaacagcttgtagcttatacaaaaata 45975675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 10199381 - 10199507
Alignment:
Q  159 tttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaaa-tagcttatgaaaaaagtttatag 257  Q
    |||| ||||||| |||||| | |||| |||||| ||||||| | |||||||| |||||||||||||  |||| ||| |||||||||||||||| |||| |    
T  10199381 tttgggagaactcatgaaaatagcttatgacat-gttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaaaagcttatcg 10199479  T
Q  258 cttgtacgaaaataattgaactttattt 285  Q
     || |||||||||| ||  |||||||||    
T  10199480 attatacgaaaatagtttgactttattt 10199507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 7136970 - 7137083
Alignment:
Q  158 gtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttata 256  Q
    |||||| ||||||||||||| | |||| ||||||  |||||| | | |||||| ||||||||||||| |||||||| |||||||||||||| || |||||    
T  7136970 gtttgaaagaacttatgaaaatcgcttatgacata-ttcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttata 7137068  T
Q  257 gcttgtacgaaaata 271  Q
    | || ||| ||||||    
T  7137069 gattatacaaaaata 7137083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 9656713 - 9656621
Alignment:
Q  194 ttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||| |||||||| | |||||||||||||||  ||||  |||||||||||| | || ||||||||| || |||||||||| ||||||||||    
T  9656713 ttcataagctgttttgagcttattttcataattcatccaggatagcttatgaacacagcttatagcttatatgaaaataatttaactttattt 9656621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 11941364 - 11941296
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcata 223  Q
    |||||||| |||| ||||||||| | |||| | |||||||||||| |||||||||| ||||||||||||    
T  11941364 actgtttgggagagcttatgaaaatagcttataacattgttcataagctgttttcagcttattttcata 11941296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 285
Target Start/End: Original strand, 24915050 - 24915150
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttatt 284  Q
    ||||||| |||||| ||| |||||| |||||||||| || |||||||| | |||||||||||| || ||||||| | ||| |||| |||| |||||||||    
T  24915050 tgacatttttcataagcttttttcaacttattttcacaagttctccaagacagcttatgaaaacagcttatagcatatacaaaaacaatttaactttatt 24915149  T
Q  285 t 285  Q
    |    
T  24915150 t 24915150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 51695496 - 51695556
Alignment:
Q  188 acattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaa 247  Q
    |||||||||||| ||| |||||| ||||||||||||| |||||||| ||||||||||||||    
T  51695496 acattgttcataagctattttcagcttattttcataaattctccaagatagcttatgaaaa 51695556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 27820337 - 27820436
Alignment:
Q  187 gacattgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    ||||||||||||| ||| |||||| ||||||||||||| |||||||| ||||||||| |||| ||  |||||||| |||  ||| |||| | ||||||||    
T  27820337 gacattgttcataagctattttcagcttattttcataaattctccaagatagcttataaaaacagcatatagcttatacataaacaatttagctttattt 27820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 3887601 - 3887731
Alignment:
Q  156 ctgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctcc-aaatagcttatgaaaaaagttta 254  Q
    |||||||  |||||||||||||    ||| |||||||||||||| |||||||| | ||||||||||||| |||||| |  |||||| | |||  || |||    
T  3887601 ctgtttggaagaacttatgaaaacatcttatgacattgttcataagctgtttttaacttattttcataagttctcctagctagcttgtaaaatcagctta 3887700  T
Q  255 tagcttgtacgaaaataattgaactttattt 285  Q
    ||||| ||| |||| ||||| ||||||||||    
T  3887701 tagctcgtaagaaattaatttaactttattt 3887731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 7941708 - 7941615
Alignment:
Q  155 actgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataatttctcc-aaatagcttatgaaaa 247  Q
    ||||||||  |||| ||||||||   |||| |||||||||||  | ||| |||||| ||||||||||||| |||||| ||||||||||||||||    
T  7941708 actgtttggaagaatttatgaaaacagcttatgacattgttccgaagctattttcaacttattttcataagttctccgaaatagcttatgaaaa 7941615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 285
Target Start/End: Original strand, 39976177 - 39976312
Alignment:
Q  154 aactgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttca---tcttattttcataatttctcc-aaatagcttatgaaaaaa 249  Q
    |||||||||||||||||||||||| |   || |||||||||||| | ||| | ||||   | |||||||||||| ||| || |||||||||||||||| |    
T  39976177 aactgtttgagagaacttatgaaaataatttatgacattgttcacacgctttattcaggttattattttcataagttccccaaaatagcttatgaaaata 39976276  T
Q  250 gtttatagcttgtacgaaaataattgaactttattt 285  Q
    || |||||||| |||  ||| || | ||||||||||    
T  39976277 gtgtatagcttatacagaaacaaatcaactttattt 39976312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 34290299 - 34290207
Alignment:
Q  194 ttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||| | |||||||| ||||||||||||| |||| ||| |||||||||||||| || ||||||||| ||| |||  || | ||||||||||    
T  34290299 ttcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagcttatacaaaataaaattaactttattt 34290207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 35179200 - 35179125
Alignment:
Q  196 catatgctgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagcttgtacgaaaat 270  Q
    |||| |||||||||| ||||||||||||| ||||||| |||| |||||||||| || ||||| |||  ||||||||    
T  35179200 cataagctgttttcagcttattttcataagttctccataataacttatgaaaacagcttataacttaaacgaaaat 35179125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 38503464 - 38503511
Alignment:
Q  186 tgacattgttcatatgctgttttcatcttattttcataatttctccaa 233  Q
    |||||||||||||| | |||||||| ||||||||||||| ||||||||    
T  38503464 tgacattgttcataagttgttttcagcttattttcataagttctccaa 38503511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 47498809 - 47498876
Alignment:
Q  157 tgtttgagagaacttatgaaattggcttgtgacattgttcatatgctgttttcatcttattttcataa 224  Q
    |||||| |||||||||||||| | |||| ||| |||||||||| | |||||| | |||||||||||||    
T  47498809 tgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttattttcataa 47498876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 10744366 - 10744300
Alignment:
Q  192 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 257  Q
    |||||||| ||||||||||||||||||| |||| ||||| || | |||||||||||| || ||||||    
T  10744366 tgttcataagctgttttcatcttatttttataagttctctaagacagcttatgaaaacagcttatag 10744300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 31517745 - 31517839
Alignment:
Q  192 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||| |||||||||| |||||||||||||  ||||||| | || ||||||| | || ||||||||| || ||||  |||| ||||||||||    
T  31517745 tgttcataagctgttttcagcttattttcataagctctccaagacagattatgaagacagcttatagcttatatgaaatcaatttaactttattt 31517839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 31918289 - 31918235
Alignment:
Q  220 cataatttctccaaatagcttatgaaaaaagtttatagcttgtacgaaaataatt 274  Q
    ||||| ||||| || |||||||||||||||  ||||||||| |||||||||||||    
T  31918289 cataagttctcaaattagcttatgaaaaaatcttatagcttatacgaaaataatt 31918235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 49888812 - 49888738
Alignment:
Q  212 cttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    ||||||||||||| ||||| || |||||||||||||| |  | ||||||| |||||||| |||| ||||||||||    
T  49888812 cttattttcataagttctctaagatagcttatgaaaacaactaatagcttatacgaaaacaattaaactttattt 49888738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 7218088 - 7218173
Alignment:
Q  201 gctgttttcatcttattttcataatttctcca-aatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    |||||||||| ||||||||||||| |||||||  |||| ||||||||| |  ||||||||| || ||||| ||||  |||||||||    
T  7218088 gctgttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 7218173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 14629971 - 14630040
Alignment:
Q  192 tgttcatatgctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagctt 260  Q
    |||||||| | |||||||| ||||||| |||||  ||||||| |||||||||||||| || |||||||||    
T  14629971 tgttcataagttgttttcagcttatttccataaagtctccaagatagcttatgaaaatagcttatagctt 14630040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 32113714 - 32113657
Alignment:
Q  201 gctgttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatag 257  Q
    |||||||||| |||||||||||||  ||||||| ||| |||||||||| |||||||||    
T  32113714 gctgttttcagcttattttcataaaatctccaacataacttatgaaaacagtttatag 32113657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 38882915 - 38882972
Alignment:
Q  190 attgttcatatgctgttttcatcttattttcataatttctccaaatagcttatgaaaa 247  Q
    |||||||||| | |||||||| ||||||||||||| ||||| | | ||||||||||||    
T  38882915 attgttcataaggtgttttcaacttattttcataagttctctagagagcttatgaaaa 38882972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 48830123 - 48830175
Alignment:
Q  233 aatagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    ||||||||||||||| |||||||||||| || ||||||| ||  |||||||||    
T  48830123 aatagcttatgaaaacagtttatagcttatatgaaaatagtttgactttattt 48830175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 178342 - 178424
Alignment:
Q  204 gttttcatcttattttcataatttctccaa-atagcttatgaaaaaagtttatagcttgtacgaaaataattgaactttattt 285  Q
    ||||||| ||||||||||||| ||||| || || |||| |||||| || | ||||||| ||||| ||||||| ||||||||||    
T  178342 gttttcagcttattttcataagttctcaaagatggcttgtgaaaacagctaatagcttatacgacaataatttaactttattt 178424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 50889 - 50852
Alignment:
Q  212 cttattttcataatttctccaaatagcttatgaaaaaa 249  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  50889 cttattttcataagttctccaaataacttatgaaaaaa 50852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 21311 - 21355
Alignment:
Q  213 ttattttcataatttctccaa-atagcttatgaaaaaagtttata 256  Q
    ||||||||||||||||||||| |||||||||||||| || |||||    
T  21311 ttattttcataatttctccaatatagcttatgaaaacagcttata 21355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University