View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504R-Insertion-14 (Length: 425)
Name: NF1504R-Insertion-14
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504R-Insertion-14 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 36986311 - 36986731
Alignment:
| Q |
7 |
cacttccttctgtgtagaagtagaactctgaggaacctctccaccagcgctgtttctttctgctgttacattggtttccactgtggctaatgatgcattt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36986311 |
cacttccttctgtgtagaagtagaactctgaggaacctctccaccagcgctgtttctttctgctgttacattggtttccactgtggctaatgatgcattt |
36986410 |
T |
|
| Q |
107 |
tgacttggcccaattttcggcaagacaggaatatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaaccaatataatcggag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36986411 |
tgacttggcccaattttcggcaagacaggaatatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaaccaatataatcggag |
36986510 |
T |
|
| Q |
207 |
gaatacgcacactgtttttgaacattttcaacatatatttatggctattactcatgcatacaagggagaagataattcaatctgaagacatatactttag |
306 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36986511 |
gaatactcacactgtttttgaacattttcaacatatatttatggctattactcatgcatacaagggagaagataattcaatctgaagacatatactttag |
36986610 |
T |
|
| Q |
307 |
agtagggtggtatcattaagtttcttact--caggtagaaaataaaatatgttcttttcatttcctacaaatagcaaattttagaatttctgagccattt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36986611 |
agtagggtggtatcattaagtttcttactcacaggtagaaaataaaatatgttcttttcatttcctacaaatagcaaactttagaatttctgagccattt |
36986710 |
T |
|
| Q |
405 |
ttggtcgctcacatttgtcac |
425 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
36986711 |
ttcgtcgctcacatttgtcac |
36986731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 26 - 303
Target Start/End: Original strand, 36980637 - 36980913
Alignment:
| Q |
26 |
gtagaactctgaggaacctctccaccagcgctgtttctttctgctgttacattggtttccactgtggctaatgatgcattttgacttggcccaattttcg |
125 |
Q |
| |
|
||||||||| ||||||| ||||||||||| || | || ||||||||| | ||||||||||||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
36980637 |
gtagaactccgaggaacttctccaccagccctttcactctctgctgttcctttggtttccactgtgactgatgatgcattttgacttggcctaattttta |
36980736 |
T |
|
| Q |
126 |
gcaagacaggaatatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaaccaatataatcggaggaatacgcacactgttttt |
225 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||| | |||||||||| ||| |||| || |||| |
|
|
| T |
36980737 |
gcatgacaggaatatcctgcaacatccaaatataagcatagagaccaagtacttcatacaagcaacccaatataattggaacaataaaca-----ttttc |
36980831 |
T |
|
| Q |
226 |
gaacattttcaacatatatttatgg---ctattactcatgcatac-aagggagaagataattcaatctgaagacatatactt |
303 |
Q |
| |
|
||||||||||||||||||| || || |||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
36980832 |
gaacattttcaacatatatctaaggttattattactcatgcatacaaagggagaaaataattcaatctgaagatctatactt |
36980913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 36985178 - 36985330
Alignment:
| Q |
28 |
agaactctgaggaacctctccaccagcgctgtttctttctgctgttacattggtttccactgtggctaatgatgcattttgacttggcccaattttcggc |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | ||| ||||| | ||||||||||||| |||| ||||| |||||||||||||||||||||| || |
|
|
| T |
36985178 |
agaactctgaggaacctctccaccagccctgtccccctctactgttcctttggtttccactgaggctgatgattcattttgacttggcccaattttaggt |
36985277 |
T |
|
| Q |
128 |
aagacaggaatatcctgcaacatccaagtattagcatagagaccaagtacttc |
180 |
Q |
| |
|
| ||||||||||||||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
36985278 |
atgacaggaatatcctgcaacatccaaataatagcatagagactaagtacttc |
36985330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 36984535 - 36984742
Alignment:
| Q |
25 |
agtagaactctgaggaacctctccaccagcgctgtttctttctgctgttacattggtttccactgtggctaatgatgcattttgacttggcccaattttc |
124 |
Q |
| |
|
|||||||||||| ||||||||| ||||| | ||| || ||||||||| |||||||||||||||||||| | ||||||||| ||||||||| |||||| |
|
|
| T |
36984535 |
agtagaactctgtggaacctctacaccaac--tgtgtcactctgctgttccattggtttccactgtggctgacgatgcattt-gacttggccaaatttta |
36984631 |
T |
|
| Q |
125 |
ggcaagacaggaatatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaacca-atataatcggaggaatacgcacactgttt |
223 |
Q |
| |
|
|||| || | ||||||||| || ||||| ||||||||||||||| || |||||| |||||||||||| ||||||| ||| |||||| || ||| |
|
|
| T |
36984632 |
ggcatga---ggatatcctgccacctccaaatattagcatagagactaaatacttcatgcaagccaacccgatataattggaagaatacacat----ttt |
36984724 |
T |
|
| Q |
224 |
ttgaacattttcaacata |
241 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36984725 |
ttgaacattttcaacata |
36984742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 36996524 - 36996650
Alignment:
| Q |
38 |
ggaacctctccaccagcgctgtttctttctgctgttacattggtttccactgtggctaatgatgcattttgacttggcccaattttcggcaagacaggaa |
137 |
Q |
| |
|
|||| |||||||||||| |||| || ||||||||| | || |||||||||||| || ||||||||||||||||||||||||||| || | |||||||| |
|
|
| T |
36996524 |
ggaaactctccaccagctctgtcactctctgctgttcctttagtttccactgtgactgatgatgcattttgacttggcccaatttcaggaatgacaggaa |
36996623 |
T |
|
| Q |
138 |
tatcctgcaacatccaagtattagcat |
164 |
Q |
| |
|
||||||| ||||||||| |||| |||| |
|
|
| T |
36996624 |
tatcctgaaacatccaaatatttgcat |
36996650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 36979088 - 36979168
Alignment:
| Q |
67 |
tgctgttacattggtttccactgtggctaatgatgcattttgacttggcccaattttcggcaagacaggaatatcctgcaa |
147 |
Q |
| |
|
||||||| | || ||||| ||||||||| |||||||||||||||||| | ||||||| |||| ||||||| |||||||||| |
|
|
| T |
36979088 |
tgctgttcctttagtttctactgtggctgatgatgcattttgacttgacgcaattttaggcatgacaggattatcctgcaa |
36979168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 36979890 - 36979937
Alignment:
| Q |
7 |
cacttccttctgtgtagaagtagaactctgaggaacctctccaccagc |
54 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
36979890 |
cacttccttctgtgtagcagtagaactcggaggaacctctccaccagc |
36979937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University