View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504R-Insertion-17 (Length: 316)
Name: NF1504R-Insertion-17
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504R-Insertion-17 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 138 - 316
Target Start/End: Complemental strand, 52077572 - 52077394
Alignment:
| Q |
138 |
ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52077572 |
ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacaac |
52077473 |
T |
|
| Q |
238 |
cctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52077472 |
cctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgtcgtttcc |
52077394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 3616287 - 3616109
Alignment:
| Q |
139 |
tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc |
238 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
3616287 |
tggttccttttagaaacaagattagtatttacaattaacccataaaaaatattattattaattctggttgttattaactattgttcatcgatctacaacc |
3616188 |
T |
|
| Q |
239 |
ctttcac-aaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcc |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
3616187 |
ctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctcttatcactcactgtcgccgtttcc |
3616109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 52077674 - 52077624
Alignment:
| Q |
22 |
aaattcatcacacaccaccatcataaattcatccctacaccatcatcactg |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52077674 |
aaattcatcacacaccaccatcataaattcatccctacaccaccatcactg |
52077624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 12666996 - 12666941
Alignment:
| Q |
14 |
aaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcac |
70 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
12666996 |
aaattcataaat-catcacacaccaccatcataaattcatcactacaccaccatcac |
12666941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 3616402 - 3616352
Alignment:
| Q |
22 |
aaattcatcacacaccaccatcataaattcatccctacaccatcatcactg |
72 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
3616402 |
aaattcatcagacaccgccatcataaattcatccatacaccaccatcactg |
3616352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 16756567 - 16756744
Alignment:
| Q |
139 |
tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc |
238 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || |
|
|
| T |
16756567 |
tggttccttttagaatcaagatttgtatttacgattaacccataaaaaatattattattaattttggttgttattaactattgttcatcgatctacaacc |
16756666 |
T |
|
| Q |
239 |
ctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16756667 |
ctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgttgtttcc |
16756744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 16756472 - 16756516
Alignment:
| Q |
9 |
ctcccaaattcataaattcatcacacaccaccatcataaattcat |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16756472 |
ctcccaaattcataaattcatcacacaccaccatcataaattcat |
16756516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 7309443 - 7309499
Alignment:
| Q |
237 |
ccctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctctta |
295 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
7309443 |
ccctttcacaaaacaagttcatgttttctc--tcaacaaaaagtatataatttctctta |
7309499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University