View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504R-Insertion-19 (Length: 246)
Name: NF1504R-Insertion-19
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504R-Insertion-19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 18078896 - 18078660
Alignment:
| Q |
9 |
acgtcatcaccctccaacggtaccgtctccatcgatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgt |
108 |
Q |
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| T |
18078896 |
acgtcatcaccctccaacggtaccgtctccatcgatgatcatgatcaggaatgggttcgtctaggtccgggactgtgagtctgactttgatttttactgt |
18078797 |
T |
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| Q |
109 |
atatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatgtaggtgaaccctaactgtctatgctgcgctgcacaggccaatatattaga |
208 |
Q |
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| T |
18078796 |
atatgtgactatgacgctgttctcgtcctccgccattgaaatttcaaatgtaggtgaaccgtaattgtctatgctgcgctgcacacgccaatagattaga |
18078697 |
T |
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| Q |
209 |
gttgaggggactttgtaatttggtttctctttgtttc |
245 |
Q |
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| T |
18078696 |
gctgaggggactttgtaatttggtttctctttgtttc |
18078660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 18076913 - 18076797
Alignment:
| Q |
77 |
gggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatgtaggtgaaccctaactgt |
176 |
Q |
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| T |
18076913 |
gggaccgtgagtgtgactttgattttcactatatatgtgactatgtggtggttctcttctcccgccatagaaatttgaaatgcaggttaaccctaactat |
18076814 |
T |
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| Q |
177 |
ctatgctgcgctgcaca |
193 |
Q |
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| T |
18076813 |
ctattctgcactgcaca |
18076797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 51478443 - 51478233
Alignment:
| Q |
40 |
tcgatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctcc |
139 |
Q |
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| T |
51478443 |
tcgatgatcatgatcaggaatgggttcatctgggtccgggacggtgagtatgactttgattttcactatatacgtgactatgtcattgttctcttcctca |
51478344 |
T |
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| Q |
140 |
gccattgaaatttcaaatgtaggtgaaccctaactgtctatgctgcgctgcacaggcc-----aatatattagagttgaggggactttgtaatttggttt |
234 |
Q |
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| T |
51478343 |
gccattgaaatttcaaatgcaggtgagccctaactatctatgccgcactgcacacgccgagagactagagcagagccgaggggac-ttgtaatttggttt |
51478245 |
T |
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| Q |
235 |
ctctttgtttca |
246 |
Q |
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| T |
51478244 |
ctctttgtttca |
51478233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 51454259 - 51454143
Alignment:
| Q |
42 |
gatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgc |
141 |
Q |
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| T |
51454259 |
gatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatataagtgactgtgtggttgttctcttcctccgc |
51454160 |
T |
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| Q |
142 |
cattgaaatttcaaatg |
158 |
Q |
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| T |
51454159 |
cattgaaatttcgaatg |
51454143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 42431626 - 42431704
Alignment:
| Q |
84 |
tgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatgtagg |
162 |
Q |
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| T |
42431626 |
tgagtgtgactttgattttcacaatatatgtggcaatgtcgttgttctcttcctccgccattgaaatttctaatgtagg |
42431704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 42433456 - 42433368
Alignment:
| Q |
70 |
taggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattgaaatttcaaatg |
158 |
Q |
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| T |
42433456 |
taggtctgggacaatgagggtgactttgatttgcacaacatatgtgacaatgtcgttgttctcttcctccgccattgaaatttcaaatg |
42433368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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