View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504R-Insertion-23 (Length: 202)
Name: NF1504R-Insertion-23
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504R-Insertion-23 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 47424518 - 47424707
Alignment:
| Q |
9 |
ttctctagaagaaaaaaggattattcttagcataaccttgaaatcaattttcagcgaccttacgaaaaatcatctacaacactgcagaaaccatctaatc |
108 |
Q |
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| T |
47424518 |
ttctctagaagaaaaaaggattattcttagcataaccttgaaatcaattttcaacgaccttacgaaaaatcatctacaacactgcagaaaccatctaatc |
47424617 |
T |
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| Q |
109 |
tacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttgg |
198 |
Q |
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| T |
47424618 |
tacgtacctgttggtgcacttctgttaatgttgatataagcatctgcttccccacaatgcctttcataagccgtacaaattgatgtttgg |
47424707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 47391042 - 47391129
Alignment:
| Q |
100 |
catctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaa |
187 |
Q |
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| T |
47391042 |
catctattctgcctacctgttgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaa |
47391129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 47419405 - 47419492
Alignment:
| Q |
100 |
catctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaa |
187 |
Q |
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| T |
47419405 |
catctattctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaa |
47419492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 47421873 - 47421964
Alignment:
| Q |
96 |
aaaccatctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaa |
187 |
Q |
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| T |
47421873 |
aaactatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaa |
47421964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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