View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504R-Insertion-24 (Length: 193)
Name: NF1504R-Insertion-24
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504R-Insertion-24 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 6e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 38064084 - 38064269
Alignment:
| Q |
8 |
acgtcatgcctcaataacatataagagcactaatcttaagataaatggtttcatatttggtggtatttcacatgagaagggtgaaaactttcccaccacg |
107 |
Q |
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| T |
38064084 |
acgtcatgcctcaataacatataagagcactaattttaagataaatggtttcatatttggtggcatttcacatgggaagggtgaaaactttcccaccatg |
38064183 |
T |
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| Q |
108 |
aaaaagttacttttaaccattagattaaatggtgttaacataaacactcaacattggataatttatttaacaccttccacatccct |
193 |
Q |
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| T |
38064184 |
ggaaagttacttttaaccattagattaaatggtgttaacatagacactcaacattggataatttctttaacaccttccacatccct |
38064269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 8466587 - 8466459
Alignment:
| Q |
65 |
tggtggtatttcacatgagaagggtgaaaactttcccaccacgaaaaagttacttttaaccattagattaaatggtgttaacataaacactcaacattgg |
164 |
Q |
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| T |
8466587 |
tggtggcatttcacatgggaagggtgaaaacttttccaccatgggaaagttacttttaaccattagattaaatggtgttaacatagacactcaacattgg |
8466488 |
T |
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| Q |
165 |
ataatttatttaacaccttccacatccct |
193 |
Q |
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| T |
8466487 |
ataatttctttaacaccttccacatccct |
8466459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 85135 - 85067
Alignment:
| Q |
66 |
ggtggtatttcacatgagaagggtgaaaactttcccaccacgaaaaagttacttttaaccattagatta |
134 |
Q |
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| T |
85135 |
ggtggcatttcacatgggaaaggtgaatcctttcccaccatggaaaagtttttttttaccattagatta |
85067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 50656957 - 50657029
Alignment:
| Q |
66 |
ggtggtatttcacatgagaagggtgaaaactttcccaccacgaaaaagttacttttaaccattagattaaatg |
138 |
Q |
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| T |
50656957 |
ggtggtatttcacatgagacacttgaaaatcttcccaccatggaaaagttatttttaaccatcagattaaatg |
50657029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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