View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504R-Insertion-5 (Length: 1029)

Name: NF1504R-Insertion-5
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504R-Insertion-5
NF1504R-Insertion-5
[»] chr3 (3 HSPs)
chr3 (11-527)||(2949278-2949794)
chr3 (632-875)||(2949876-2950121)
chr3 (888-1002)||(2968385-2968502)
[»] chr2 (2 HSPs)
chr2 (9-527)||(11036549-11037068)
chr2 (12-527)||(20692387-20692906)
[»] chr5 (2 HSPs)
chr5 (724-807)||(32902229-32902312)
chr5 (804-873)||(32902129-32902204)
[»] chr4 (1 HSPs)
chr4 (375-514)||(19485205-19485349)
[»] chr1 (1 HSPs)
chr1 (368-416)||(45676748-45676796)
[»] chr6 (3 HSPs)
chr6 (368-416)||(5750454-5750502)
chr6 (372-415)||(20631743-20631786)
chr6 (292-329)||(26355623-26355660)


Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 11 - 527
Target Start/End: Original strand, 2949278 - 2949794
Alignment:
Q  11 tagaagtgatttggcatcccccatctttcaactgggtaaaatgtaacactgatggtgcagcaacatgaactccatctatggttgcttgtgggggcttgtt 110  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2949278 tagaagtgatttggcatcccccgtctttcaactgggtaaaatataacactgatggtgcagcaacatgaactccatctatggctgcttgtgggggcttgtt 2949377  T
Q  111 aagaaatcaggaagctatctgtacaggttgttttgctcaaatttaggcccaggttcatctttattttctgaattaccaggtgctatgcatgcaattaaga 210  Q
     | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||    
T  2949378 cataaatcaggaagctatctgtataggttgttttgctcaaatttaggcccaggtttatctttatttgctgaattaccaggtgctacgcaagcaattaaga 2949477  T
Q  211 tagcacacaacaatggttggttacatctttgacttgagacagactccttgctagtccttcaagctctcaagtcaatttctattgtgccttggaggctaag 310  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2949478 tagcacacaacaatggttggttacatctttggcttgagacagactccttgctagtccttcaagctttcaagtcaatttctattgtgccttggaggctaag 2949577  T
Q  311 aaacagatgggacaactgtatgatcttagcagaaaacatgagtctcattgttacccctatttttagagaaggaaattgttgttctgataaattagcaaat 410  Q
    ||||| ||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2949578 aaacaaatgagacaactgtatgatcttagtggaaaacatgagtctcattgttacccctatttttagagaaggaaattgttgttctgataaattagcaaat 2949677  T
Q  411 attggtttaaccactgacacattcgtttggatggatgacattccaatccaagttagagcagatttcaccagaaatagactaggattaccttgctttagat 510  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2949678 attggtttaaccactgacatattcgtttggatggatgacatttcaatccaagttagagcagatttcaccagacatagactaggattaccttgctttagat 2949777  T
Q  511 ttgttaacttctgaaag 527  Q
    |||||||||||||||||    
T  2949778 ttgttaacttctgaaag 2949794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 632 - 875
Target Start/End: Original strand, 2949876 - 2950121
Alignment:
Q  632 ttatgttttttactctacgaaaattaataagagtgttttagtcattgcccattata--ttaccataaaattaatttaattaaccacttagtaaatcttct 729  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  2949876 ttatgttttttactttacgaaaattaataagagtgttttagtcattgcccattatatattaccataaaattaatttaattaaccacttggtaaatcttct 2949975  T
Q  730 tcttggctctttcatttttcagcttcagcttcttaataatcgcttccactgaattcgatttcagaaccttaacactcatctcaacaacggcaccgtcaca 829  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2949976 tcttggctctttcatttttcagcttcagcttcttaataatcgcttccactgaattcgatttcagaaccttaacactcatctcaacaacggcaccgtcaca 2950075  T
Q  830 cgtgacctcaccgttccattttccggcgccggttaagcattatact 875  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2950076 cgtgacctcaccgttccattttccggcgccggttaagcattatact 2950121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 888 - 1002
Target Start/End: Original strand, 2968385 - 2968502
Alignment:
Q  888 ctaagagataaatgagttgatcagaggtatgatacatgatagaatattaaggc-aca-ttgctcaatgtagacgacctatttagtgggttaac-tctggg 984  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||||| || | ||||    
T  2968385 ctaagagataaatgagttgatcagaagtatgatacataatagaatattaaggcaacatttgatcaatgtagacgacctatttagtgggttgacttttggg 2968484  T
Q  985 tgttgttgtaatggacta 1002  Q
    ||||||||||||||||||    
T  2968485 tgttgttgtaatggacta 2968502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 527
Target Start/End: Original strand, 11036549 - 11037068
Alignment:
Q  9 catagaagtgatttggcatcccccatctttcaactgggtaaaatgtaacactgatggtgcagcaacatgaactccatctatggttgcttgtgggggcttg 108  Q
    |||||||||||||||||||||||| |||  |||| || |||||||||| ||| ||||||||||   | |||||||||| |||| |||||| || ||||||    
T  11036549 catagaagtgatttggcatcccccgtctcccaaccggataaaatgtaatactaatggtgcagctgtaggaactccatccatggctgcttgcggaggcttg 11036648  T
Q  109 ttaagaaatcaggaagctatctgtacaggttgttttgctca-aatttaggcccaggttcatctttattttctgaattaccaggtgctatgcatgcaatta 207  Q
    || ||||||||||||||||| |||| ||| ||||||||||| ||||||||  || ||||||||| ||||  ||||||| ||||||||||||||||||||     
T  11036649 ttcagaaatcaggaagctatttgtataggatgttttgctcataatttaggttcaagttcatcttaatttgttgaattatcaggtgctatgcatgcaattg 11036748  T
Q  208 agatagcacacaacaatggttggttacatctttgacttgagacagactccttgctagtccttcaagctctcaagtcaatttctattgtgccttggaggct 307  Q
    ||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||| |||||||| |||||||||||||||||||| |    
T  11036749 agatagcacacaacaatggttggttacatctctggcttgagactgactccttgctagtccttccagctttcaagtcagtttctattgtgccttggaggtt 11036848  T
Q  308 aagaaacagatgggacaactgtatgatcttagcagaaaacatgagtctcattgttacccctatttttagagaaggaaattgttgttctgataaattagca 407  Q
    |||||||||||||||||| ||||||| |||||||| |||||| | ||| |||||||| | |||  |||||||||||||||||| |  ||||||||||| |    
T  11036849 aagaaacagatgggacaattgtatgaccttagcaggaaacataaatcttattgttactcatatcattagagaaggaaattgttttgatgataaattagaa 11036948  T
Q  408 aatattggtttaaccactgacacattcgtttggatggatgacattccaatccaagttagagcagatttcaccagaaatagactaggattaccttgcttta 507  Q
    |||||||||||||||||| | || ||  | |||||| ||||||||||||| |||||||||| | ||||||||||  |||||||  ||||||||| |||||    
T  11036949 aatattggtttaaccactaatacttttatctggatgaatgacattccaattcaagttagagtatatttcaccagtgatagacttagattaccttacttta 11037048  T
Q  508 gatttgttaacttctgaaag 527  Q
    ||||||| ||||||||||||    
T  11037049 gatttgtaaacttctgaaag 11037068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 12 - 527
Target Start/End: Original strand, 20692387 - 20692906
Alignment:
Q  12 agaagtgatttggcatcccccatctttcaactgggtaaaatgtaacactgatggtgcagcaacatgaactcc---atctatggttgcttgtgggggcttg 108  Q
    |||||||||||||| |||||||  |||||||||| |||||||||| || ||||| || ||  |  |||| ||   |||| ||| |||||||||||| |||    
T  20692387 agaagtgatttggcctcccccagatttcaactggataaaatgtaatacggatggagctgctgccggaacccctgcatctttgggtgcttgtgggggtttg 20692486  T
Q  109 ttaagaaatcaggaagctatctgtacaggttgttttgctca-aatttaggcccaggttcatctttattttctgaattaccaggtgctatgcatgcaatta 207  Q
    || ||||| || |||||| | |||| |||||| |||||||| |||||||| |||||||||||||||||| |||||||| ||||||||||||| || |||     
T  20692487 ttcagaaaccaagaagctctttgtataggttgctttgctcagaatttaggtccaggttcatctttatttgctgaattatcaggtgctatgcaggctattg 20692586  T
Q  208 agatagcacacaacaatggttggttacatctttgacttgagacagactccttgctagtccttcaagctctcaagtcaatttctattgtgccttggaggct 307  Q
    |||||||||||||||| || ||||||||||| || ||||| || |||||| ||||||||||||||||  |||||||| | || ||||||||||||||| |    
T  20692587 agatagcacacaacaaaggctggttacatctctggcttgaaactgactccatgctagtccttcaagcattcaagtcagtctccattgtgccttggaggat 20692686  T
Q  308 aagaaacagatgggacaactgtatgatcttagcagaaaacatgagtctcattgttacccctatttttagagaaggaaattgttgttctgataaattagca 407  Q
    |||||||||||||||||| |||||||| ||||||  ||  |||| ||| |||||||| | ||| |  |  |||||||| | |||| |||||||||||| |    
T  20692687 aagaaacagatgggacaattgtatgatattagcatgaagtatgaatcttattgttactcatatctacatggaaggaaacttttgtgctgataaattagga 20692786  T
Q  408 aatattggtttaaccactgacacattcgtttggatggatgacattccaatccaagttagagcagatttcaccagaaatagactaggattaccttgcttta 507  Q
    ||||| |||||||||||| |  ||||    |||||| | ||||||||||| ||||||||||||||||||||| | |||| |||||| ||||||| |||||    
T  20692787 aatatgggtttaaccactaattcattgaaatggatgaaggacattccaattcaagttagagcagatttcacctggaataaactaggcttaccttacttta 20692886  T
Q  508 gatttgttaacttctgaaag 527  Q
    | ||||| || || ||||||    
T  20692887 ggtttgtaaatttatgaaag 20692906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 724 - 807
Target Start/End: Complemental strand, 32902312 - 32902229
Alignment:
Q  724 tcttcttcttggctctttcatttttcagcttcagcttcttaataatcgcttccactgaattcgatttcagaaccttaacactca 807  Q
    ||||||||||  ||||||||||||||||||||| ||||| ||||||||||||||| |||||||| ||| |||||||||||||||    
T  32902312 tcttcttcttcactctttcatttttcagcttcaccttctcaataatcgcttccaccgaattcgacttcggaaccttaacactca 32902229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 804 - 873
Target Start/End: Complemental strand, 32902204 - 32902129
Alignment:
Q  804 ctcatctcaacaacggcaccgtcacac------gtgacctcaccgttccattttccggcgccggttaagcattata 873  Q
    |||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||| ||||||||||    
T  32902204 ctcatctcaacaacggcaccgtcacactcacacgtgacctcaccgttccattttccggcgccggtcaagcattata 32902129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 375 - 514
Target Start/End: Complemental strand, 19485349 - 19485205
Alignment:
Q  375 agagaaggaaattgttgttctgataaattagcaaatattggtttaaccactgacacattcgtttggatggatgacattccaatccaagttagagcagatt 474  Q
    |||||| | ||||||| | |||||||||| || | |||||||||||||||| ||   || ||||||||| ||||||||||||| |||| |||||| ||||    
T  19485349 agagaaaggaattgttatgctgataaattggcgattattggtttaaccactaactatttggtttggatgaatgacattccaattcaagctagagctgatt 19485250  T
Q  475 tcaccag-----aaatagactaggattaccttgctttagatttgt 514  Q
    |||  ||     |||||| ||||| |||||||||| |||||||||    
T  19485249 tcattagaaattaaataggctaggtttaccttgctatagatttgt 19485205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 45676748 - 45676796
Alignment:
Q  368 tatttttagagaaggaaattgttgttctgataaattagcaaatattggt 416  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  45676748 tatttttagggaaggtaattgttgtgctgataaattagcaaatattggt 45676796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 5750454 - 5750502
Alignment:
Q  368 tatttttagagaaggaaattgttgttctgataaattagcaaatattggt 416  Q
    ||||||||| ||||| ||||||||| |||||| ||||||||||||||||    
T  5750454 tatttttagggaaggtaattgttgtgctgatagattagcaaatattggt 5750502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 20631743 - 20631786
Alignment:
Q  372 tttagagaaggaaattgttgttctgataaattagcaaatattgg 415  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||    
T  20631743 tttagagaaggaaattgttttgctgataaattagcaaattttgg 20631786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 26355623 - 26355660
Alignment:
Q  292 ttgtgccttggaggctaagaaacagatgggacaactgt 329  Q
    |||||||||||||  |||||||||||||||||||||||    
T  26355623 ttgtgccttggagaataagaaacagatgggacaactgt 26355660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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