View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504R-Insertion-6 (Length: 1015)
Name: NF1504R-Insertion-6
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504R-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 668; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 7 - 931
Target Start/End: Complemental strand, 28790761 - 28789842
Alignment:
| Q |
7 |
caagaataactgtgaagattttgcagtttattgcaaaacaggtctttttgcaaccacaaaaggctgcagtggacaagcagcatcttatttggctgctacc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28790761 |
caagaataactgtgaagattttgcagtttattgcaaaacaggtctttttgcaaccacaaaaggctgcagtggacaagcagcatcttatttggctgctacc |
28790662 |
T |
|
| Q |
107 |
agtactgtagcctcttcatcactccggtttgtgaactccagtctttttggtaaggctgtggttggctgtggaacttactgcattaaaagattggtttctg |
206 |
Q |
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| T |
28790661 |
agtactgtagcctcttcatcattccggtttgtgaactccagtctttttggtaaggctttggttggctgtggaacttactgcattaaaagattggtttctg |
28790562 |
T |
|
| Q |
207 |
atattggatttcgctacgaagttattaaagatgtaactaaagtttcagtagaaagaatgcctgagttgaccatggaagctagtagactggagttctaaaa |
306 |
Q |
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| T |
28790561 |
atattggatttcgctacgaagttattaaagatgtaactaaagttccagtagaaagaatacctgagttgaccatggaagctagtagactggagttctaaaa |
28790462 |
T |
|
| Q |
307 |
atgcctttgttaaatttttatgctaagcaaatgattttgcatttgttataatatgcggttgtaccaatgcttgtcagcttgaatctacaaacaatcatgg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | ||| |
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| T |
28790461 |
atgcctttgttaaatttttatgctaagcaaatgattttgcatttgttataatatgcggttgtgccaatgctcgtcagcttgaatctacaaatagtca--- |
28790365 |
T |
|
| Q |
407 |
tgaactcttattgcagctttactgtcacctgcataatgcatatcaaatcatctacttagtttgcttattagttttagtttttagagtgttttcaaaagcc |
506 |
Q |
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| T |
28790364 |
tgaactcttgtttcagccttatagtcacttgcataatgcatatcaaaactttgacttagttcgcttattagttttagtttttggactggtttcaaaagcc |
28790265 |
T |
|
| Q |
507 |
atttcagtaaaattaatcaaaacttgtttcggtgagaattgtttatggatgatcacannnnnnnncctgtttgatttcgaacatcattgatgcaagcaca |
606 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||| |
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| T |
28790264 |
atttcagtaaaattaataaaaacttgttttggtgagaattgtttatggatgatcacattttttt--ctgtttgatttcaactgtcagtgatgcaagcaca |
28790167 |
T |
|
| Q |
607 |
tcatgtgttagtatttatgtactattgcctgaatattgtttctttagtcccatgcttttaatgttgtcgctgttcaatattgaaattgagttgtacaaaa |
706 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
28790166 |
tcatgagttagtatttatgtactattgcttgaatattgtttctttagtcccatgcttttaatgttgtcgttgttcaatattaaaattgagttgtacaaaa |
28790067 |
T |
|
| Q |
707 |
tatggattggtttacattttttaaaatatcatttaaggatgaccataatccttcatatcaaaaatattttcaagtctaggtatgtctttctcagttgcat |
806 |
Q |
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||| |||||||||||||||| |||||| ||| |||||||| ||| ||||| ||||||| | | ||||||| ||||||||||||||||||||||||||||| |
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| T |
28790066 |
tatcgattggtttacattttctaaaatgtca-ttaaggattaccgtaatctttcatattacagatattttaaagtctaggtatgtctttctcagttgcat |
28789968 |
T |
|
| Q |
807 |
gaatgcaacttatgtttatctgtttcatgattgagaggctttc-aacagttacatctttgaaaccggtttataaaaaatacaagcatgaagatcttttgc |
905 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28789967 |
gaatgcagcttatgtttatcagtttcatgattgagaggctttctaacagttacatctttgaaaccggtttatgaaaaatacaagcatgaagatcttttgc |
28789868 |
T |
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| Q |
906 |
caccaaagttgagttgcttcctcaac |
931 |
Q |
| |
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|| |||||||| ||||||||||||| |
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| T |
28789867 |
caacaaagttggtttgcttcctcaac |
28789842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 948 - 992
Target Start/End: Complemental strand, 28789827 - 28789783
Alignment:
| Q |
948 |
aaagttgcttcttcaacttgatagagagagtgtgtctgtgarata |
992 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
28789827 |
aaagttgcttcttcaacttgataaggagagtgtgtctgtgagata |
28789783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 28783654 - 28783614
Alignment:
| Q |
8 |
aagaataactgtgaagattttgcagtttattgcaaaacagg |
48 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||||||| |
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| T |
28783654 |
aagaataattgtgaagattttgcaatttattgcaaaacagg |
28783614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 725
Target Start/End: Complemental strand, 28780770 - 28780707
Alignment:
| Q |
662 |
ttttaatgttgtcgctgttcaatattgaaattgagttgtacaaaatatggattggtttacattt |
725 |
Q |
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||||| ||||||| |||||||||||||| ||||||| ||||||||||||| | |||| ||||| |
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| T |
28780770 |
ttttagtgttgtctctgttcaatattgatgttgagttctacaaaatatggacttgtttgcattt |
28780707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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