View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504R-Insertion-7 (Length: 965)

Name: NF1504R-Insertion-7
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504R-Insertion-7
NF1504R-Insertion-7
[»] chr3 (7 HSPs)
chr3 (8-548)||(46970392-46970952)
chr3 (584-938)||(46969208-46969565)
chr3 (244-288)||(31152921-31152965)
chr3 (247-288)||(31153716-31153757)
chr3 (244-288)||(22896747-22896791)
chr3 (622-663)||(4982326-4982367)
chr3 (259-288)||(14986045-14986074)
[»] chr2 (6 HSPs)
chr2 (315-569)||(39731185-39731443)
chr2 (56-283)||(29404187-29404423)
chr2 (321-504)||(13200494-13200675)
chr2 (315-393)||(40771629-40771707)
chr2 (244-288)||(3677487-3677531)
chr2 (259-288)||(30712093-30712122)
[»] chr4 (4 HSPs)
chr4 (446-548)||(51923111-51923213)
chr4 (315-410)||(51921893-51921988)
chr4 (244-288)||(23777412-23777456)
chr4 (248-288)||(36225471-36225511)
[»] chr1 (3 HSPs)
chr1 (315-404)||(6222160-6222249)
chr1 (315-385)||(41002626-41002696)
chr1 (255-288)||(3934298-3934331)
[»] chr7 (10 HSPs)
chr7 (77-288)||(7579459-7579679)
chr7 (77-145)||(7570834-7570902)
chr7 (77-145)||(7577249-7577317)
chr7 (315-393)||(31552676-31552754)
chr7 (327-393)||(33800656-33800721)
chr7 (244-288)||(1507393-1507437)
chr7 (244-288)||(33473794-33473838)
chr7 (296-327)||(31552642-31552673)
chr7 (244-274)||(7570696-7570726)
chr7 (244-274)||(7577111-7577141)
[»] scaffold0041 (1 HSPs)
scaffold0041 (134-288)||(7181-7346)
[»] chr8 (1 HSPs)
chr8 (246-288)||(13474661-13474703)
[»] chr5 (1 HSPs)
chr5 (255-288)||(33106030-33106063)


Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 548
Target Start/End: Complemental strand, 46970952 - 46970392
Alignment:
Q  8 agtttttgtttgacattaatttattttgctactagnnnnnnnnnnnnngaaagaatattttgctactagttaatgctctgaagtttaacacttggaacta 107  Q
    |||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46970952 agtttttgtttgacattaatttattttgctactagtttttttttttt-gaaagaatattttgctactagttaatgctctgaagtttaacacttggaacta 46970854  T
Q  108 cattaaaaacatgttcattaatcggaacaaatcaacatctataacagaaatgttgccgaaaaactagggaaaaattatgtccatctatttgtaattacta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || |||| ||||||||||    
T  46970853 cattaaaaacatgttcattaatcggaacaaatcaacatctataacggaaatgctgccgaaaaactagggaaaaattatgtcaatgtattcgtaattacta 46970754  T
Q  208 aactgccctttaatttaaagttaatttgaatagaca---------tttagtaaaatacaagtgggtgtaacttgctaacttgcaccttagactctgattg 298  Q
    ||||||||||||||||||| ||||||||||||||||         |||||||||||||||||||||||| |||||||||||||||||||| || |  |||    
T  46970753 aactgccctttaatttaaaattaatttgaatagacaaaagggtgttttagtaaaatacaagtgggtgtagcttgctaacttgcaccttaggctatatttg 46970654  T
Q  299 gtttcagagaaactataaggaaagaaaga----------ttgaagaatattctattttccattgttttatttgccaacaataaggaaaggaaagaaagtt 388  Q
    |||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||||    
T  46970653 gtttcagagaaactataaggaaagaaagaggaaggaagattgaagaatattctattttccattgtttggtttgccagcaataaggaaaggaaaaaaagtt 46970554  T
Q  389 ttatgaaggaacccacatctaaaaactttcccaccttgaatgca--gaaaggcaggggagaataccaaattccatgaaatgactatacagcccttgcttt 486  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||    
T  46970553 ttatgatggaacccacatctaaaaactttcccaccttgaatgcacggaaaggcgggggagaataccaaattccatgaaatgacaatacagccgttgtttt 46970454  T
Q  487 tgaggcatatttccttttgttttaccaaatgtgtgcaccttttaacaacttgtgtaaaatga 548  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  46970453 ttaggcatatttccttttgtttaaccaaatgtgtgcaccttttaacaacttatgtaaaatga 46970392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 584 - 938
Target Start/End: Complemental strand, 46969565 - 46969208
Alignment:
Q  584 tatttcttcttaaattatcaaatttcttactacaaacagatccattaaaacatctctttcatcagcccaaaccctaaaccgcttctgattcatcttaaac 683  Q
    |||||||||||||| ||||| ||| |||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46969565 tatttcttcttaaactatcacattccttactgcaaacagatccataaaaatatctctttcatcagcccaaaccctaaaccgtttctgattcatcttaaac 46969466  T
Q  684 tagtttcaatcttcaaacgttctttgaatcctttctatgttcgtcaaatacaccacaatccaatacacagaaacgattaattgcaatagcattacaaatt 783  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  46969465 tagtttcaatcgtcaaacgttctttgaatcctttctatgttcgtcaaatactccacaatccaatacacataaacgattaattgcaatagcatgacaaatt 46969366  T
Q  784 cgttttcaggttatgatggttttcgtttgaaccgagacacgttttaaaattgatagatgaagaaatttgagatttgtgtgctactacttgtatggtaact 883  Q
    |||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  46969365 cgttttcaagttgtgatggttttcatttgaaccgagacgcgttttaaaattgataaatgaagaaatttgagatttgtgtgctattacttgtatggtaact 46969266  T
Q  884 tattaattg-aaactcaaaattt-attaattga-ttacatagtaagaaagatgagaaa 938  Q
    ||||||||| ||||||||||||| ||||||||| |||| ||| |||||||||||||||    
T  46969265 tattaattgaaaactcaaaatttaattaattgatttacgtaggaagaaagatgagaaa 46969208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 31152965 - 31152921
Alignment:
Q  244 tttagtaaaatacaagtgggtgtaacttgctaacttgcaccttag 288  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  31152965 tttagtaaaatacaagtgggtgcaacttgctaacttgcaccttag 31152921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 31153716 - 31153757
Alignment:
Q  247 agtaaaatacaagtgggtgtaacttgctaacttgcaccttag 288  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  31153716 agtaaaatacaagtgggtgtagcttgctaacttgcaccttag 31153757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 22896747 - 22896791
Alignment:
Q  244 tttagtaaaatacaagtgggtgtaacttgctaacttgcaccttag 288  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||    
T  22896747 tttaataaaatataagtggatgtaacttgctaacttgcaccttag 22896791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 663
Target Start/End: Complemental strand, 4982367 - 4982326
Alignment:
Q  622 gatccattaaaacatctctttcatcagcccaaaccctaaacc 663  Q
    |||||||  ||||||||||||||||| |||||||||||||||    
T  4982367 gatccatagaaacatctctttcatcaacccaaaccctaaacc 4982326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 14986045 - 14986074
Alignment:
Q  259 gtgggtgtaacttgctaacttgcaccttag 288  Q
    ||||||||||||||||||||||||||||||    
T  14986045 gtgggtgtaacttgctaacttgcaccttag 14986074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 7e-95; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 315 - 569
Target Start/End: Complemental strand, 39731443 - 39731185
Alignment:
Q  315 aaggaaagaaagattgaagaatattctattttccattgttttatttgccaacaataaggaaaggaaagaaagttttatgaaggaacccacatctaaaaac 414  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| || || |||||||||||||    
T  39731443 aaggagagaaagattgaagaatattctattttccattgtttggtttgccaacaataaggtaaggaaagaaagttttatgatgggacgcacatctaaaaac 39731344  T
Q  415 tttcccaccttgaatgca--gaaaggcaggggagaataccaaattccatgaaatgactatacagcccttgcttttgaggcatatttccttttgttttacc 512  Q
    ||||||||||||||||||  ||||||  ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |    
T  39731343 tttcccaccttgaatgcacggaaaggttggggagaataccaaattccatgaaatgacaatacaacccttgcttttgaggcatatttccttttgttttatc 39731244  T
Q  513 aaatgtgtgcaccttttaacaacttgtgtaaaatga--taaaaatgtttatttttctac 569  Q
    ||||||||||||||||||||  ||||||||||||||   ||||||||||||||||||||    
T  39731243 aaatgtgtgcaccttttaacgtcttgtgtaaaatgaataaaaaatgtttatttttctac 39731185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 56 - 283
Target Start/End: Complemental strand, 29404423 - 29404187
Alignment:
Q  56 gaaagaatattttgctactagttaatgctctgaagtttaacacttggaactacattaaaaacatgttcattaatcggaacaaatcaacatctataacaga 155  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  29404423 gaaaggatattttgctactagttaatgcgctgaagtttaacacttgaaactacattaaaaacatgttcattaattggaacaaatcaacatctataacgga 29404324  T
Q  156 aatgttgccgaaaaactagggaaaaattatgtccatctatttgtaattactaaactgccctttaatttaaagttaatttgaatagaca---------ttt 246  Q
    ||||  |||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |          ||    
T  29404323 aatgccgccgaaaaatcagggaaaaattatgtccatgtatttgtaattactaaactgccctttagtttaaaattaatttgaatagataaaagggtgtgtt 29404224  T
Q  247 agtaaaatacaagtgggtgtaacttgctaacttgcac 283  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29404223 agtaaaatacaagtgggtgtagcttgctaacttgcac 29404187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 321 - 504
Target Start/End: Complemental strand, 13200675 - 13200494
Alignment:
Q  321 agaaagattgaagaatattctattttccattgttttatttgccaacaataaggaaaggaaagaaagttttatgaaggaacccacatctaaaaactttccc 420  Q
    ||||||||||||||||||||| |||||| ||||||  ||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||    
T  13200675 agaaagattgaagaatattctgttttccgttgtttggtttgccagcaataaggtaaggaaagaaagttttatgatgggacccacatctaaaaactttccc 13200576  T
Q  421 accttgaatgcagaaaggcaggggagaataccaaattccatgaaatgactatacagcccttgcttttgaggcatatttcctttt 504  Q
    | ||||||||||   | ||  ||  |||||||||||| ||||||||||| ||| |||| |||||||| || |||||||||||||    
T  13200575 atcttgaatgcacgcatgc--ggaggaataccaaatttcatgaaatgacaatatagcctttgctttttagacatatttcctttt 13200494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 315 - 393
Target Start/End: Original strand, 40771629 - 40771707
Alignment:
Q  315 aaggaaagaaagattgaagaatattctattttccattgttttatttgccaacaataaggaaaggaaagaaagttttatg 393  Q
    ||||| |||||| |||||||||||||| | |||||||| ||  ||| ||| |||||||  |||||||||||||||||||    
T  40771629 aaggagagaaaggttgaagaatattctctcttccattgcttggtttaccagcaataagacaaggaaagaaagttttatg 40771707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 3677531 - 3677487
Alignment:
Q  244 tttagtaaaatacaagtgggtgtaacttgctaacttgcaccttag 288  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||    
T  3677531 tttagtaaaatataagtaggtgtagcttgctaacttgcaccttag 3677487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 30712122 - 30712093
Alignment:
Q  259 gtgggtgtaacttgctaacttgcaccttag 288  Q
    ||||||||||||||||||||||||||||||    
T  30712122 gtgggtgtaacttgctaacttgcaccttag 30712093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 8e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 446 - 548
Target Start/End: Original strand, 51923111 - 51923213
Alignment:
Q  446 gaataccaaattccatgaaatgactatacagcccttgcttttgaggcatatttccttttgttttaccaaatgtgtgcaccttttaacaacttgtgtaaaa 545  Q
    ||||||||||||||  |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51923111 gaataccaaattccgagaaatgacaatacatcccttgcttttgaggcatatttccttttgttttaccaaatgagtgcaccttttaacaacttgtgtaaaa 51923210  T
Q  546 tga 548  Q
    |||    
T  51923211 tga 51923213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 315 - 410
Target Start/End: Original strand, 51921893 - 51921988
Alignment:
Q  315 aaggaaagaaagattgaagaatattctattttccattgttttatttgccaacaataaggaaaggaaagaaagttttatgaaggaacccacatctaa 410  Q
    ||||| ||||||||||||||||||||| |||||||||||||  ||||||| |||||||| |||||||||||||||||||  || | ||||||||||    
T  51921893 aaggagagaaagattgaagaatattctgttttccattgtttggtttgccagcaataaggtaaggaaagaaagttttatggtgggatccacatctaa 51921988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 23777412 - 23777456
Alignment:
Q  244 tttagtaaaatacaagtgggtgtaacttgctaacttgcaccttag 288  Q
    |||||||||| ||||||||||| | ||||||||||||||||||||    
T  23777412 tttagtaaaagacaagtgggtgcagcttgctaacttgcaccttag 23777456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 36225471 - 36225511
Alignment:
Q  248 gtaaaatacaagtgggtgtaacttgctaacttgcaccttag 288  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  36225471 gtaaaagacaagtgggtgtagcttgctaacttgcaccttag 36225511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 7e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 6222160 - 6222249
Alignment:
Q  315 aaggaaagaaagattgaagaatattctattttccattgttttatttgccaacaataaggaaaggaaagaaagttttatgaaggaacccac 404  Q
    ||||| |||||| |||||||||||||| |||||||||||||  |||||||||||||||| |||||||||||||||||||  |||||||||    
T  6222160 aaggagagaaaggttgaagaatattctcttttccattgtttggtttgccaacaataaggtaaggaaagaaagttttatgctggaacccac 6222249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 41002696 - 41002626
Alignment:
Q  315 aaggaaagaaagattgaagaatattctattttccattgttttatttgccaacaataaggaaaggaaagaaa 385  Q
    ||||| |||||| |||||||||||||| |||| ||| |||| |||||||| |||||||  ||| |||||||    
T  41002696 aaggagagaaaggttgaagaatattctctttttcatggtttgatttgccagcaataagataagaaaagaaa 41002626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 3934298 - 3934331
Alignment:
Q  255 acaagtgggtgtaacttgctaacttgcaccttag 288  Q
    |||||||| |||||||||||||||||||||||||    
T  3934298 acaagtggatgtaacttgctaacttgcaccttag 3934331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 77 - 288
Target Start/End: Complemental strand, 7579679 - 7579459
Alignment:
Q  77 ttaatgctctgaagtttaacacttggaactacattaaaaacatgttcattaatcggaacaaatcaacatctataacagaaatgttgccgaaaaactaggg 176  Q
    |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||||| | | |   ||||   | |||||||| ||||    
T  7579679 ttaatgctctgaagtttaacacttggaactgcattgaaaacatgttaattaatcggaataaatcaacatttttcatgcaaattccgtcgaaaaacaaggg 7579580  T
Q  177 aaa-aattatgtccatctatttgtaattactaaactgccctttaatttaaagttaatttgaata--gaca---------tttagtaaaatacaagtgggt 264  Q
    ||| || | ||||||| | |   || |||||||||||||||| ||||| || ||||||||||||  ||||         |||| ||||||||||||| ||    
T  7579579 aaataaatttgtccatatgt---tagttactaaactgcccttcaattttaaattaatttgaatagggacaaagtggtgttttactaaaatacaagtgagt 7579483  T
Q  265 gtaacttgctaacttgcaccttag 288  Q
    ||| ||||||||||||||||||||    
T  7579482 gtagcttgctaacttgcaccttag 7579459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 7570902 - 7570834
Alignment:
Q  77 ttaatgctctgaagtttaacacttggaactacattaaaaacatgttcattaatcggaacaaatcaacat 145  Q
    |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||||    
T  7570902 ttaatgctctgaagtttaacacttggaactgcattgaaaacatgttaattaatcggaataaatcaacat 7570834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 7577317 - 7577249
Alignment:
Q  77 ttaatgctctgaagtttaacacttggaactacattaaaaacatgttcattaatcggaacaaatcaacat 145  Q
    |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||||    
T  7577317 ttaatgctctgaagtttaacacttggaactgcattgaaaacatgttaattaatcggaataaatcaacat 7577249  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 393
Target Start/End: Original strand, 31552676 - 31552754
Alignment:
Q  315 aaggaaagaaagattgaagaatattctattttccattgttttatttgccaacaataaggaaaggaaagaaagttttatg 393  Q
    ||||| |||||| |||||||||||||| |||||||| ||||  |||||||||||||| | |||||||||||||||||||    
T  31552676 aaggagagaaaggttgaagaatattctcttttccatggtttggtttgccaacaataaagtaaggaaagaaagttttatg 31552754  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 393
Target Start/End: Complemental strand, 33800721 - 33800656
Alignment:
Q  327 attgaagaatattctattttccattgttttatttgccaacaataaggaaaggaaagaaagttttatg 393  Q
    ||||||||||||||| |||| ||||||||  ||||||||| |||||| |||||||||||||||||||    
T  33800721 attgaagaatattctctttttcattgtttg-tttgccaactataaggtaaggaaagaaagttttatg 33800656  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 1507437 - 1507393
Alignment:
Q  244 tttagtaaaatacaagtgggtgtaacttgctaacttgcaccttag 288  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||    
T  1507437 tttagtaaattacaagtgggtgcagcttgctaacttgcaccttag 1507393  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 33473794 - 33473838
Alignment:
Q  244 tttagtaaaatacaagtgggtgtaacttgctaacttgcaccttag 288  Q
    |||||||||||| |||||||||||||||||||| || ||||||||    
T  33473794 tttagtaaaatataagtgggtgtaacttgctaatttacaccttag 33473838  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 327
Target Start/End: Original strand, 31552642 - 31552673
Alignment:
Q  296 ttggtttcagagaaactataaggaaagaaaga 327  Q
    ||||||||||||||||||||||||||||||||    
T  31552642 ttggtttcagagaaactataaggaaagaaaga 31552673  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 244 - 274
Target Start/End: Complemental strand, 7570726 - 7570696
Alignment:
Q  244 tttagtaaaatacaagtgggtgtaacttgct 274  Q
    |||||||||||||||||||||||||||||||    
T  7570726 tttagtaaaatacaagtgggtgtaacttgct 7570696  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 244 - 274
Target Start/End: Complemental strand, 7577141 - 7577111
Alignment:
Q  244 tttagtaaaatacaagtgggtgtaacttgct 274  Q
    |||||||||||||||||||||||||||||||    
T  7577141 tttagtaaaatacaagtgggtgtaacttgct 7577111  T

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Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 7181 - 7346
Alignment:
Q  134 acaaatcaacatctataacagaaatgttgccgaaaaacta-gggaaaaattatgtccatct--atttgtaattactaaactgccctttaatttaaagtta 230  Q
    ||||||||||||||||||| ||| ||  || ||||||| | |||||| ||||||||||| |  ||| ||||||| ||||||||| || ||||| || |||    
T  7181 acaaatcaacatctataacggaagtgccgcagaaaaaccaagggaaacattatgtccatatgtattggtaatta-taaactgcctttcaatttcaaatta 7279  T
Q  231 atttgaatagaca---------tttagtaaaatacaagtgggtgtaacttgctaacttgcaccttag 288  Q
    ||||||||||| |         |||||||||||||||||||||||  |||||||||||  |||||||    
T  7280 atttgaatagataaaagggtgttttagtaaaatacaagtgggtgtggcttgctaacttataccttag 7346  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 13474703 - 13474661
Alignment:
Q  246 tagtaaaatacaagtgggtgtaacttgctaacttgcaccttag 288  Q
    ||||||| || ||||||||| ||||||||||||||||||||||    
T  13474703 tagtaaattataagtgggtgcaacttgctaacttgcaccttag 13474661  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 33106030 - 33106063
Alignment:
Q  255 acaagtgggtgtaacttgctaacttgcaccttag 288  Q
    ||||||||||||| ||||||||||||||||||||    
T  33106030 acaagtgggtgtagcttgctaacttgcaccttag 33106063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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