View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504R-Insertion-8 (Length: 848)
Name: NF1504R-Insertion-8
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504R-Insertion-8 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0007 (Bit Score: 769; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 9 - 823
Target Start/End: Original strand, 75026 - 75838
Alignment:
| Q |
9 |
gtatctccattgacagatcctcaatgtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgtcacgactga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
75026 |
gtatctccattgacagatcctcaatgtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgtgacgactga |
75125 |
T |
|
| Q |
109 |
aaatgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75126 |
aaatgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttga |
75225 |
T |
|
| Q |
209 |
ctttggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
75226 |
ctttggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacatt |
75325 |
T |
|
| Q |
309 |
gtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75326 |
gtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattat |
75425 |
T |
|
| Q |
409 |
tttatgatagtttttaccatgtgttcacaattataggctggactgtataatctttatgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcag |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75426 |
tttatgatagtttttaccatgtgttcacaattataggctggactgtataatctttatgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcag |
75525 |
T |
|
| Q |
509 |
tcttttataaaatcaacccaaacaaagaattcctcatcttttgggaaaaccaaccaaaaccataaaaattcctcatctttgccagatctatagttaatgt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75526 |
tcttttataaaatcaacccaaacaaagaattcctcatcttttgggaaaaccaaccaaaaccataaaaattcctcatctttgccagatctatagttaatgt |
75625 |
T |
|
| Q |
609 |
gactcactcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgcannnnnnnnnnnaaatgtttggta |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
75626 |
gactcactcatattctgttctgacaaaagaattctaatctcaaaagaggggctcttgcaaaagagtttgattttgca--tttttttttaaatgtttggta |
75723 |
T |
|
| Q |
709 |
gaaaaatataatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttacta |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75724 |
gaaaaatataatttgtatttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttacta |
75823 |
T |
|
| Q |
809 |
ttctcacaggttctg |
823 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
75824 |
ttctcacatgttctg |
75838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 124 - 417
Target Start/End: Original strand, 618871 - 619164
Alignment:
| Q |
124 |
atctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccatt |
223 |
Q |
| |
|
|||||||||||||| ||| | | | ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
618871 |
atctttttcatatgcaaatgaagtacttcaatgataatatggacaaagcacttttagaaaataagtggaatcatgcagaggttgactttggattcccatt |
618970 |
T |
|
| Q |
224 |
catgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcggga |
323 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||| |||||||||| | |||||||||||||||||| | ||||| |
|
|
| T |
618971 |
catgtatagtggaatccatgtattggaagagaaaagtaacatgaaagatattcgattcagtaacccagagattgatgctaacattgtgttacacccggga |
619070 |
T |
|
| Q |
324 |
tgttgaagtaagcatatcattcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattattttatgata |
417 |
Q |
| |
|
|||| ||||||| | |||||||||||||| |||||||| | ||||||||||||||| ||| ||||||| |||||||||| || ||||| ||||| |
|
|
| T |
619071 |
tgttaaagtaagtacatcattcattttacccaaattgtcataaagctttcttcttgtagtgtagaatgttaatttgtttaataattttttgata |
619164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 1e-74; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 41 - 358
Target Start/End: Complemental strand, 29689393 - 29689073
Alignment:
| Q |
41 |
aagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgt---cacgactgaaaatgtatcatttaaatctttttcatatg |
137 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||| ||| | |||||| || || |||||| | | | |||||||| |||||||||||||| |
|
|
| T |
29689393 |
aagagtgatcatcaacgacaatacatttttctatacacatggtaggaagattgataggtgttcacgaccggacacatatcatttgcatctttttcatatg |
29689294 |
T |
|
| Q |
138 |
aaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaa |
237 |
Q |
| |
|
|| |||| | ||||| | || |||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
29689293 |
caagtggaatacttcaatggtaatatggataaagcacttttagaaaataaatggaaccatgcagaggttgactttggattcccattcatgtttagtggaa |
29689194 |
T |
|
| Q |
238 |
tccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcgggatgttgaagtaagca |
337 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||||| |||||||||| ||||||| | |||||||||||||||||| |||||||| |||||||||| | |
|
|
| T |
29689193 |
tccatgtattgaaagagaagagtaacatgaaggatattagattcaccaatccagagaatgatgctaacattgtgttacactcgggattttgaagtaagta |
29689094 |
T |
|
| Q |
338 |
tatcattcattttacgcaaat |
358 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
29689093 |
tatcattcattttacccaaat |
29689073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 111 - 352
Target Start/End: Complemental strand, 29718503 - 29718259
Alignment:
| Q |
111 |
atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact |
210 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
29718503 |
atgtatcatttgcatctttttcatatgcaaacggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatgcagagatttatt |
29718404 |
T |
|
| Q |
211 |
ttgga---tccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacat |
307 |
Q |
| |
|
|||| || ||||||||||||||||| ||||| |||||||||| |||| ||||||| |||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
29718403 |
ttggtgtctctgcattcatgtatagtggagtccatgtattgaaagaaaaaaatagcatggaggatattcgattcaccaacccagcgaatgatgctaacat |
29718304 |
T |
|
| Q |
308 |
tgtgttacgctcgggatgttgaagtaagcatatcattcattttac |
352 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29718303 |
tgtgttacactcgggatgttgaagtaagtatatcattcattttac |
29718259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 111 - 306
Target Start/End: Complemental strand, 29767296 - 29767101
Alignment:
| Q |
111 |
atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact |
210 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||| | ||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
29767296 |
atgtatcatttgcatctttttcatatgcaaatggaatacttcaatgataatatggacaaggcacttttagaaaataaatggaaccatgcagaggttgact |
29767197 |
T |
|
| Q |
211 |
ttggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaaca |
306 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
29767196 |
ttggattcccattcatgtttagtggaatccatgtattgaaagagaaaagtagcatgaaagatattcgattcaccaacccagagaatgatgctaaca |
29767101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 34 - 292
Target Start/End: Original strand, 29471870 - 29472125
Alignment:
| Q |
34 |
gtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgtcacgactgaaaatgtatcatttaaatctttttca |
133 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||| ||| ||| || | |||| | |||| | || |||||||| || |||||||||| |
|
|
| T |
29471870 |
gtcctgtaagagtgatcatcaatggtgatacatttttctataggcatggtgaaaataaacgtttatcaccag---aagtgtatcatctacatctttttca |
29471966 |
T |
|
| Q |
134 |
tatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagt |
233 |
Q |
| |
|
|||| ||| ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
29471967 |
tatgcaaatggaaaaattgaataataatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgactttgggttcccattcatgtatagt |
29472066 |
T |
|
| Q |
234 |
ggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccaga |
292 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
29472067 |
ggaatccatgtattgaaaaagaaaagtaacatgaaggatattcaattcaccaacccaga |
29472125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 41 - 309
Target Start/End: Complemental strand, 29662935 - 29662668
Alignment:
| Q |
41 |
aagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgtcacgactgaaaatgtatcatttaaatctttttcatatgaaa |
140 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||| || || ||||| ||| |||||||| | | ||| |||||||||| |||||||||||||| || |
|
|
| T |
29662935 |
aagagtggtcatcaatggatatacatttgtctataaatgtggtgagattctacctatgtcactgcgggaaacgtatcatttacatctttttcatatgcaa |
29662836 |
T |
|
| Q |
141 |
agggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatcc |
240 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | || ||||||||| |
|
|
| T |
29662835 |
actgaaaaattcaatgatgatatggacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggattcccattccagaat-gtggaatcc |
29662737 |
T |
|
| Q |
241 |
atatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattg |
309 |
Q |
| |
|
|| |||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
29662736 |
atgtattgaaagagaaaagtaacatgaatgatattcgattcaccaacccagagaatgatgctaatattg |
29662668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 124 - 347
Target Start/End: Complemental strand, 29711864 - 29711646
Alignment:
| Q |
124 |
atctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccatt |
223 |
Q |
| |
|
||||||||||| || ||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || |
|
|
| T |
29711864 |
atctttttcatttgcaaatggaaaatttcaatgataatatagacaaagcacttttagaaaataagtggaaccatgcagaggttgactttggattcccttt |
29711765 |
T |
|
| Q |
224 |
catgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcggga |
323 |
Q |
| |
|
| | |||||||||||||| |||||||||||||||||| |||||| || |||| |||||||| |||| | |||| ||||||||||||| ||||||| |
|
|
| T |
29711764 |
ccagaatagtggaatccatgtattgaaagagaaaagtaacatgaaagacattcaattcacca-----gagaatgatgccaacattgtgttacactcggga |
29711670 |
T |
|
| Q |
324 |
tgttgaagtaagcatatcattcat |
347 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
29711669 |
tgttgaagtaagtatatcattcat |
29711646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 113 - 358
Target Start/End: Complemental strand, 29800020 - 29799774
Alignment:
| Q |
113 |
gtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgacttt |
212 |
Q |
| |
|
||||||||| ||||||| |||||| ||| |||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||||| || || ||||| |
|
|
| T |
29800020 |
gtatcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttacttt |
29799921 |
T |
|
| Q |
213 |
ggatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagacta-atgctaacattgtg |
311 |
Q |
| |
|
|||| | |||| | |||||||||||| ||||||||| ||||||| |||||||||||||||||||| | |||||| || | |||||||||||||| |
|
|
| T |
29799920 |
ggattcaaattccataaaagtggaatccatgtattgaaagctaaaagtaacatgaaggatattcgattcagcgacccagggagttgatgctaacattgtg |
29799821 |
T |
|
| Q |
312 |
ttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat |
358 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
29799820 |
ttacactcgggatgttgtagtaagtatatcattcattttacccaaat |
29799774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 113 - 358
Target Start/End: Complemental strand, 28487608 - 28487361
Alignment:
| Q |
113 |
gtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgacttt |
212 |
Q |
| |
|
||||||||| ||||||| |||||| ||| |||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||||| || || ||||| |
|
|
| T |
28487608 |
gtatcatttgcatcttttccatatgcaaacggaaaacttcaatgataatatggataaatcacttttagaaaataagtggaaccatgcaaaggtttacttt |
28487509 |
T |
|
| Q |
213 |
ggatccccattcatgtatagtggaatccatatattgaaagag-aaaagtagcatgaaggatattcgattcaccaacccagagacta-atgctaacattgt |
310 |
Q |
| |
|
|||| | |||| | |||||||||||| |||||||||| ||||||| |||||||||||||||||||| | |||||| || | ||||||||||||| |
|
|
| T |
28487508 |
ggattcaaattccataaaagtggaatccatgtattgaaagactaaaagtaacatgaaggatattcgattcagcgacccagggagttgatgctaacattgt |
28487409 |
T |
|
| Q |
311 |
gttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat |
358 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
28487408 |
gttacactcgggatgttgtagtaagtatatcattcattttacccaaat |
28487361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 114 - 361
Target Start/End: Complemental strand, 29755789 - 29755546
Alignment:
| Q |
114 |
tatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttg |
213 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||| || ||||| |
|
|
| T |
29755789 |
tatcatttgcatctttttcatatgcaaatggaaaacttcaatgataatatggacaaagcactttcagaaaataagtggaaccatgcggaggttctctttg |
29755690 |
T |
|
| Q |
214 |
gatccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgtt |
313 |
Q |
| |
|
||| | |||| | | |||||||||||| ||||||||||||||| || | |||||||||||||||||||||| ||||||| | ||||||||||||| | |
|
|
| T |
29755689 |
gattcaaattccttaaaagtggaatccatgtattgaaagagaaaattaacttgaaggatattcgattcaccaatccagagaatgatgctaacattgtaat |
29755590 |
T |
|
| Q |
314 |
acgctcgggatgttgaagtaagcatatcattcattttacgcaaattgt |
361 |
Q |
| |
|
| ||||| | ||||||||| ||||||||||||| || |||||||| |
|
|
| T |
29755589 |
-cactcgg---ggtgaagtaagtatatcattcatttgacccaaattgt |
29755546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 40 - 357
Target Start/End: Complemental strand, 29671502 - 29671188
Alignment:
| Q |
40 |
taagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatg---tcacgactgaaaatgtatcatttaaatctttttcatat |
136 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||| ||| | |||||| ||| | |||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
29671502 |
taagagtgatcatcaatggaaatacatttatctacacagatggtttgaagatgggtacgaaatcaccgctgaatatgtatcatttgcatctttttcatat |
29671403 |
T |
|
| Q |
137 |
gaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtgga |
236 |
Q |
| |
|
||||| |||||| || || |||| |||||| |||| |||||| ||||||| |||||||||||||||| |||| ||||||| |||||| | | |||||| |
|
|
| T |
29671402 |
gaaaatggaaaactttaatgataatatggaaaaagtactttttgaaaatatgtggaaccatgcagaggttgattttggattaccattccagaaaagtgga |
29671303 |
T |
|
| Q |
237 |
atccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacattgtgttacgctcgggatgttgaagtaagc |
336 |
Q |
| |
|
|| ||| ||| |||||||||||||| ||||||||||||| |||||||||| |||||| | | | || | |||| || |||||||||||||||| |
|
|
| T |
29671302 |
attcatgtatcgaaagagaaaagtaacatgaaggatattagattcaccaatccagag------gttgattttattttactctagggatgttgaagtaagt |
29671209 |
T |
|
| Q |
337 |
atatcattcattttacgcaaa |
357 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
29671208 |
atatcattcattttacccaaa |
29671188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 29741397 - 29741318
Alignment:
| Q |
177 |
ttagaaaataagtggaaccatgcagagcttgactttggatccccattcatgtatagtggaatccatatattgaaagagaa |
256 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
29741397 |
ttagaaaataagtggaaccatgcagaggttgactttggattcccgttcatgtatagcggaatccatgtattgaaagagaa |
29741318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 247 - 452
Target Start/End: Complemental strand, 29704953 - 29704744
Alignment:
| Q |
247 |
tgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaa----tgctaac-attgtgttacgctcgggatgttgaagtaagcatatc |
341 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| |||||||| | | | ||||||| |||||||||| | |||||||||||||| ||||| |
|
|
| T |
29704953 |
tgaaagagaaaagtaacatgaaggatatttgattcagtaacccagaaaattaacgatgctaaccattgtgttacagccaagatgttgaagtaagtatatc |
29704854 |
T |
|
| Q |
342 |
attcattttacgcaaattgtaacaaagctttcttcttgaagtttagaatgctaatttgtttcattattttatgatagtttttaccatgtgttcacaatta |
441 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||| |||| || | | || || |||||||||||| ||||||||||||| | || | ||||||||||||||| |
|
|
| T |
29704853 |
attcattttacg-aaattgtcataaatcttgcttcctgtaatgtaaaaaattaatttgtttcactattttatgatagatctttctatgtgttcacaatta |
29704755 |
T |
|
| Q |
442 |
taggctggact |
452 |
Q |
| |
|
|||| |||||| |
|
|
| T |
29704754 |
taggttggact |
29704744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 726 - 813
Target Start/End: Complemental strand, 28484766 - 28484679
Alignment:
| Q |
726 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
813 |
Q |
| |
|
||||||||||| |||||||||||||| | || || |||||||| || |||||||| || ||| ||||||||||| ||||||||||| |
|
|
| T |
28484766 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
28484679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 739 - 822
Target Start/End: Complemental strand, 29715238 - 29715155
Alignment:
| Q |
739 |
tttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
822 |
Q |
| |
|
|||||||||||||| |||| || |||||||| || |||||||| || ||| ||||||||||| ||||||||||| || ||||| |
|
|
| T |
29715238 |
tttctttctagattgacgataataaagggatatactaactgcacttcattcattttgtattttcttactattctcccatgttct |
29715155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 726 - 813
Target Start/End: Complemental strand, 29797178 - 29797091
Alignment:
| Q |
726 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttactattctc |
813 |
Q |
| |
|
||||||||||| |||||||||||||| | || || |||||||| || |||||||| || ||| ||||||||||| ||||||||||| |
|
|
| T |
29797178 |
tttagaatactcctttctttctagattgaggataacaaagggatatactaactgcacttcattcattttgtattttcttactattctc |
29797091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 726 - 807
Target Start/End: Complemental strand, 28500489 - 28500408
Alignment:
| Q |
726 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
807 |
Q |
| |
|
||||||||||| | |||||||||||| ||||| ||||||||||||| ||||| || || ||| ||||||||||| ||||| |
|
|
| T |
28500489 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
28500408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 757 - 822
Target Start/End: Complemental strand, 29708079 - 29708014
Alignment:
| Q |
757 |
acaagaaagggatttattaactgcattttatttcttttgtattttgttactattctcacaggttct |
822 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||| ||||||||||| ||| |||||||||| ||||| |
|
|
| T |
29708079 |
acaagaaatggatttactaactgcactttattcattttgtattttcttagtattctcacatgttct |
29708014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 726 - 807
Target Start/End: Complemental strand, 29812900 - 29812819
Alignment:
| Q |
726 |
tttagaatacttttttctttctagattaacgacaagaaagggatttattaactgcattttatttcttttgtattttgttact |
807 |
Q |
| |
|
||||||||||| | |||||||||||| ||||| ||||||||||||| ||||| || || ||| ||||||||||| ||||| |
|
|
| T |
29812900 |
tttagaatactcctctctttctagattgacgactagaaagggatttactaactacacttcattcattttgtattttcttact |
29812819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 29767370 - 29767329
Alignment:
| Q |
40 |
taagagtgatcatcaatggcaatacatttttctatacatatg |
81 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| ||| |
|
|
| T |
29767370 |
taagagtgatcatcaacggaaatacatttttctatacacatg |
29767329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 6e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 111 - 358
Target Start/End: Original strand, 12592388 - 12592638
Alignment:
| Q |
111 |
atgtatcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgact |
210 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
12592388 |
atgtatcatttgcatctttttcatatgcaaatggagaacttcaatgataatatggacaaagcacttttagaaaataagtggaaccatgcagaggtttatt |
12592487 |
T |
|
| Q |
211 |
ttgga---tccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagagactaatgctaacat |
307 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||||||||| |||| | |||| |||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
12592488 |
ttggtgtctctgcattcatgtatagtggaatccatgtattgaaagataaaaacaacatggaggatattcgattcaccaacccagcgagtgatgctaacat |
12592587 |
T |
|
| Q |
308 |
tgtgttacgctcgggatgttgaagtaagcatatcattcattttacgcaaat |
358 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
12592588 |
tgtgttacactcggaatgttaaagtaagtatatcattcattttacccaaat |
12592638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 28 - 290
Target Start/End: Complemental strand, 208883 - 208618
Alignment:
| Q |
28 |
ctcaatgtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgtca---cgactgaaaatgtatcatttaaa |
124 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||| || |||| || | | | ||||||||||| | |
|
|
| T |
208883 |
ctcaacgtcctgtaagagtggtcatcaatggcaatacatttttctatacacatgattcgaagatagataggtcatcacggccggacatgtatcatttgca |
208784 |
T |
|
| Q |
125 |
tctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttggatccccattc |
224 |
Q |
| |
|
||||||||||||| ||| |||||| ||||| || | ||||||||||||||| | ||||||||||||||| |||||||||||||| |||||| | ||||| |
|
|
| T |
208783 |
tctttttcatatgcaaatggaaaacttcaatgaaaatatggacaaagcactctcagaaaataagtggaatcatgcagagcttgattttggactctcattc |
208684 |
T |
|
| Q |
225 |
atgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaaccca |
290 |
Q |
| |
|
|| | |||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
208683 |
ctggaaagtggaatccatgtattgaaagagagaagtagcatgaacgatattcgattcatcaaccca |
208618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 533
Target Start/End: Complemental strand, 235972 - 235903
Alignment:
| Q |
464 |
atgtaacttggtttcgtaatgcaggtaaaagagagcatcggtcagtcttttataaaatcaacccaaacaa |
533 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||||||| ||||| |||||| |||| ||| |||||||| |
|
|
| T |
235972 |
atgtaacttggcttctcaatgcaggtagaagagagcattggtcactcttttggaaaaccaatccaaacaa |
235903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 294
Target Start/End: Complemental strand, 5918407 - 5918229
Alignment:
| Q |
116 |
tcatttaaatctttttcatatgaaaagggaaaaattcaacgatactatggacaaagcacttttagaaaataagtggaaccatgcagagcttgactttgga |
215 |
Q |
| |
|
||||||| || ||||||||||| ||| ||||||||||| ||| | |||| |||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
5918407 |
tcatttacatatttttcatatgcaaatagaaaaattcaatgatgatgtggatgcagcacttttagaaaatgagtggaaccatgtggtagttgactttggg |
5918308 |
T |
|
| Q |
216 |
tccccattcatgtatagtggaatccatatattgaaagagaaaagtagcatgaaggatattcgattcaccaacccagaga |
294 |
Q |
| |
|
| |||| | |||||||||||| | ||||||||||||||||| |||| |||||| | ||||||||| ||||||| |
|
|
| T |
5918307 |
tttgaattccataaaagtggaatccatgtgttgaaagagaaaagtagtatgatggatatccaattcaccaatccagaga |
5918229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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