View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1504R-Insertion-9 (Length: 803)

Name: NF1504R-Insertion-9
Description: NF1504R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1504R-Insertion-9
NF1504R-Insertion-9
[»] chr2 (16 HSPs)
chr2 (95-803)||(35889923-35890632)
chr2 (606-789)||(35554374-35554558)
chr2 (614-676)||(35554511-35554573)
chr2 (205-258)||(34989793-34989846)
chr2 (188-241)||(35887687-35887740)
chr2 (537-597)||(35554716-35554776)
chr2 (102-172)||(35528347-35528418)
chr2 (564-610)||(35546015-35546062)
chr2 (442-489)||(35554604-35554651)
chr2 (613-676)||(35889766-35889829)
chr2 (413-489)||(35889688-35889761)
chr2 (102-174)||(34989848-34989921)
chr2 (568-608)||(35887218-35887259)
chr2 (103-144)||(35892221-35892262)
chr2 (742-789)||(35889781-35889828)
chr2 (740-769)||(34989503-34989532)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-99)||(75026-75116)
[»] chr1 (2 HSPs)
chr1 (392-496)||(21444998-21445099)
chr1 (301-381)||(21445137-21445217)
[»] scaffold0012 (1 HSPs)
scaffold0012 (28-92)||(208819-208883)
[»] chr3 (1 HSPs)
chr3 (165-197)||(42189733-42189765)
[»] chr6 (2 HSPs)
chr6 (34-75)||(29471870-29471911)
chr6 (40-77)||(29767333-29767370)


Alignment Details
Target: chr2 (Bit Score: 690; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 95 - 803
Target Start/End: Complemental strand, 35890632 - 35889923
Alignment:
Q  95 tatgtcgcagatagttggtatatagcatccactacatcctacaaaataattaatattttcaaaaccatattatatttaattatttcctcgttctatagta 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890632 tatgtcgcagatagttggtatatagcatccactacatcctacaaaataattaatattttcaaaaccatattatatttaattatttcctcgttctatagta 35890533  T
Q  195 acagtacattaatgaaatataaaattgcatatgaaatgtgaagattgaataatgttatgcacctgaccagcatacaaattcatggtatgcaagccaggag 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35890532 acagtacattaatgaaatataaaattgcatatgaaatgtgaagattgaataatgttatgcacctgaccagcattcaaattcatggtatgcaagccaggag 35890433  T
Q  295 ggtttccatttcttttcttggaagaaattgtagtatcagaaggtccttctgattttctcttccttagtgttatgttaatagaagaatcactagtgttgcc 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890432 ggtttccatttcttttcttggaagaaattgtagtatcagaaggtccttctgattttctcttccttagtgttatgttaatagaagaatcactagtgttgcc 35890333  T
Q  395 accaccttccttctgattatcagtagtggaactgatcatctttttcggtgcctcgttcttaagatgcttctccattttttggtcacaagaagaataaatt 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890332 accaccttccttctgattatcagtagtggaactgatcatctttttcggtgcctcgttcttaagatgcttctccattttttggtcacaagaagaataaatt 35890233  T
Q  495 ttgattattgaaatatgtaactaatgtcaagaatgtgaagattttgcatatacacatggaattatatttatagtatgaatgaagagctagctaagaagga 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890232 ttgattattgaaatatgtaactaatgtcaagaatgtgaagattttgcatatacacatggaattatatttatagtatgaatgaagagctagctaagaagga 35890133  T
Q  595 atatgtaactaactaacatctttctgatgagaagttgaagaatcactgccagtgcctccctcattcaatgctacatcatcttcgccactttctttctgat 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890132 atatgtaactaactaacatctttctgatgagaagttgaagaatcactgccagtgcctccctcattcaatgctacatcatcttcgccactttctttctgat 35890033  T
Q  695 gattctcctcca-ttttgcgcttccctgattcgttgttacatcatcacctttctgatcagtagttgaagaatcactgccaatgcctccctcattcactgt 793  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890032 gattctcctccatttttgcacttccctgattcgttgttacatcatcacctttctgatcagtagttgaagaatcactgccaatgcctccctcattcactgt 35889933  T
Q  794 tacgtcatca 803  Q
    ||| ||||||    
T  35889932 tacatcatca 35889923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 606 - 789
Target Start/End: Original strand, 35554374 - 35554558
Alignment:
Q  606 actaacatctttctgatgagaagttgaagaatcactgccagtgcctccctcattcaatgctacatcatcttcgccactttctttctgatgattctcctcc 705  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  35554374 actaacatctttctgatgagaagttgaagaattactgccagtgcctccctcattcaatgctacataatcttcaccactttctttctgatgatcctcctcc 35554473  T
Q  706 a-ttttgcgcttccctgattcgttgttacatcatcacctttctgatcagtagttgaagaatcactgccaatgcctccctcattca 789  Q
    | ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  35554474 atttttgagcttccctgattcattgctacatcatcacctttctgatcagtagttgaagaatcactaccagtgcctccctcattca 35554558  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 614 - 676
Target Start/End: Original strand, 35554511 - 35554573
Alignment:
Q  614 ctttctgatgagaagttgaagaatcactgccagtgcctccctcattcaatgctacatcatctt 676  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  35554511 ctttctgatcagtagttgaagaatcactaccagtgcctccctcattcattgctgcatcatctt 35554573  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 34989846 - 34989793
Alignment:
Q  205 aatgaaatataaaattgcatatgaaatgtgaagattgaataatgttatgcacct 258  Q
    |||||||||||||||||||||||||| |||||||||||| | ||||||||||||    
T  34989846 aatgaaatataaaattgcatatgaaaagtgaagattgaacagtgttatgcacct 34989793  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 35887740 - 35887687
Alignment:
Q  188 tatagtaacagtacattaatgaaatataaaattgcatatgaaatgtgaagattg 241  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  35887740 tatagtaacagtacattgatgaaatataaagttgcatctgaaatgtgaagattg 35887687  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 35554716 - 35554776
Alignment:
Q  537 tttgcatatacacatggaattatatttatagtatgaatgaagagctagctaagaaggaata 597  Q
    ||||||| |||||| ||| |||||||||||||| |||||||||| |||| |||||||||||    
T  35554716 tttgcatgtacacaaggagttatatttatagtacgaatgaagagttagcgaagaaggaata 35554776  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 35528347 - 35528418
Alignment:
Q  102 cagatagttggtatatagcatccactacatcctacaaaat-aattaatattttcaaaaccatattatattta 172  Q
    |||||||| |||||| ||||||||| |||||||||||||| | ||| ||||||||||| ||||| |||||||    
T  35528347 cagatagtcggtatagagcatccaccacatcctacaaaatcatttattattttcaaaagcatataatattta 35528418  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 564 - 610
Target Start/End: Original strand, 35546015 - 35546062
Alignment:
Q  564 atagtatgaatgaagagctagctaagaaggaat-atgtaactaactaa 610  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  35546015 atagtatgaatgaagagctagctaagaaggaatgatgtaactcactaa 35546062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 442 - 489
Target Start/End: Original strand, 35554604 - 35554651
Alignment:
Q  442 gtgcctcgttcttaagatgcttctccattttttggtcacaagaagaat 489  Q
    ||||||| |||| ||||| |||||||||||||||||||||||||||||    
T  35554604 gtgcctcattctcaagattcttctccattttttggtcacaagaagaat 35554651  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 613 - 676
Target Start/End: Complemental strand, 35889829 - 35889766
Alignment:
Q  613 tctttctgatgagaagttgaagaatcactgccagtgcctccctcattcaatgctacatcatctt 676  Q
    |||||| ||| || ||||||||||||||| |||||||||||||| |||| |||| |||||||||    
T  35889829 tctttcagatcagtagttgaagaatcactaccagtgcctccctcgttcattgctgcatcatctt 35889766  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 489
Target Start/End: Complemental strand, 35889761 - 35889688
Alignment:
Q  413 atcagtagtggaactgatcatctttttcggtgcctcgttcttaagatgcttctccattttttggtcacaagaagaat 489  Q
    |||||| || |||| |||||||||||   ||| | |||||||||||| |||||||||| ||||||||||||||||||    
T  35889761 atcagtcgtagaaccgatcatctttt---gtgtcacgttcttaagatccttctccattgtttggtcacaagaagaat 35889688  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 34989921 - 34989848
Alignment:
Q  102 cagatagttggtatatagcatccactacatcctacaaaataattaa-tattttcaaaaccatattatatttaat 174  Q
    |||||||||| |||| ||||||||| | ||||| |||||||||||| || || ||||||||||| |||||||||    
T  34989921 cagatagttgatatacagcatccaccaaatcctgcaaaataattaattaattgcaaaaccatataatatttaat 34989848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 608
Target Start/End: Complemental strand, 35887259 - 35887218
Alignment:
Q  568 tatgaatgaagagctagctaagaaggaa-tatgtaactaact 608  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  35887259 tatgaatgaagagctagctaagaaggaactatgtaactaact 35887218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 35892262 - 35892221
Alignment:
Q  103 agatagttggtatatagcatccactacatcctacaaaataat 144  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  35892262 agatagttggtataaagcatccactacatcctgcaaaataat 35892221  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 789
Target Start/End: Complemental strand, 35889828 - 35889781
Alignment:
Q  742 ctttctgatcagtagttgaagaatcactgccaatgcctccctcattca 789  Q
    ||||| |||||||||||||||||||||| ||| |||||||||| ||||    
T  35889828 ctttcagatcagtagttgaagaatcactaccagtgcctccctcgttca 35889781  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 769
Target Start/End: Complemental strand, 34989532 - 34989503
Alignment:
Q  740 acctttctgatcagtagttgaagaatcact 769  Q
    ||||||||||||||||||||||||||||||    
T  34989532 acctttctgatcagtagttgaagaatcact 34989503  T

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Target: scaffold0007 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 75026 - 75116
Alignment:
Q  9 gtatctccattgacagatcctcaatgtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75026 gtatctccattgacagatcctcaatgtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagatacgtatgt 75116  T

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Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 392 - 496
Target Start/End: Complemental strand, 21445099 - 21444998
Alignment:
Q  392 gccaccaccttccttctgattatcagtagtggaactgatcatctttttcggtgcctcgttcttaagatgcttctccattttttggtcacaagaagaataa 491  Q
    ||||||||||||||||||||   | ||||||||||||||||| ||||   |||||||  ||||||| |||||||||||| ||||||||||||||||||||    
T  21445099 gccaccaccttccttctgatggccggtagtggaactgatcatttttt---gtgcctccatcttaagctgcttctccattatttggtcacaagaagaataa 21445003  T
Q  492 atttt 496  Q
    |||||    
T  21445002 atttt 21444998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 301 - 381
Target Start/End: Complemental strand, 21445217 - 21445137
Alignment:
Q  301 catttcttttcttggaagaaattgtagtatcagaaggtccttctgattttctcttccttagtgttatgttaatagaagaat 381  Q
    ||||||||||||| |||||| ||  ||  ||||||||||||||| |||||||||||||| | |||||||| ||||||||||    
T  21445217 catttcttttcttcgaagaagtttcagcttcagaaggtccttctaattttctcttccttggcgttatgtttatagaagaat 21445137  T

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Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 208883 - 208819
Alignment:
Q  28 ctcaatgtcctctaagagtgatcatcaatggcaatacatttttctatacatatgatgagaagata 92  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||  |||||||    
T  208883 ctcaacgtcctgtaagagtggtcatcaatggcaatacatttttctatacacatgattcgaagata 208819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 42189765 - 42189733
Alignment:
Q  165 tatatttaattatttcctcgttctatagtaaca 197  Q
    |||||||||||||||||||||||||||||||||    
T  42189765 tatatttaattatttcctcgttctatagtaaca 42189733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 29471870 - 29471911
Alignment:
Q  34 gtcctctaagagtgatcatcaatggcaatacatttttctata 75  Q
    ||||| |||||||||||||||||||  |||||||||||||||    
T  29471870 gtcctgtaagagtgatcatcaatggtgatacatttttctata 29471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 29767370 - 29767333
Alignment:
Q  40 taagagtgatcatcaatggcaatacatttttctataca 77  Q
    |||||||||||||||| || ||||||||||||||||||    
T  29767370 taagagtgatcatcaacggaaatacatttttctataca 29767333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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