View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_high_14 (Length: 389)
Name: NF1504_1D_high_14
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_high_14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 23 - 389
Target Start/End: Original strand, 8946628 - 8946994
Alignment:
| Q |
23 |
tatacattatttgcataggggctgatgacattgccaatacttattctcaaacaccatttaggaaaccacaatatgatattccagcatacactaacttatt |
122 |
Q |
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| T |
8946628 |
tatacattatttgcataggggctgatgacattgccaatacttattctcaaacaccatttaggaaaccacaatatgatattccagcatacactaacttatt |
8946727 |
T |
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| Q |
123 |
gatttcatatgccttagacttcattcaggtattctgttatacaaacatggattcatagagttttgaataagaatgttgtttcttataacttcgttttctt |
222 |
Q |
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| T |
8946728 |
gatttcatatgccttagacttcattcaggtattctgttatacaaacatggattcatagagttttgaataagaatgttgtttcttataacttcattttctt |
8946827 |
T |
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| Q |
223 |
tgtccagtaatattagttattacctaaaataatgcaggaactttatggtttaggagctagaagaattggagtaattgggatgccatatatagggtgtgtt |
322 |
Q |
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| T |
8946828 |
tgtccagtaatattagttattacctaaaataatgcaggaactttatggtttaggagctagaagaattggagtaattggcatgccatatatagggtgtgtt |
8946927 |
T |
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| Q |
323 |
ccctcacagagaacaattggaggaggaatgtatagatactgttcaggtttagaaaacgaagctgcaa |
389 |
Q |
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| T |
8946928 |
ccctcacagagaacaattggaggaggaatgtatagacactgttcaggtttagaaaacgaagctgcaa |
8946994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 257 - 348
Target Start/End: Original strand, 8939329 - 8939420
Alignment:
| Q |
257 |
caggaactttatggtttaggagctagaagaattggagtaattgggatgccatatatagggtgtgttccctcacagagaacaattggaggagg |
348 |
Q |
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| T |
8939329 |
caggaactatatggtttaggagctagaaggattggagtaattggtatgccaaatatagggtgtgtgccctcacagagaacaattggaggagg |
8939420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 8938270 - 8938418
Alignment:
| Q |
23 |
tatacattatttgcataggggctgatgacattgccaatacttattctcaaacaccatttaggaaaccacaatatgatattccagcatacactaacttatt |
122 |
Q |
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||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||| | | |||||||||| | ||||||| ||||||| |
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| T |
8938270 |
tatacattatttgcataggaagtaatgacattgccaatacttatgctcaaacaccatataggagagtgaagtatgatattcgatcatacacagacttatt |
8938369 |
T |
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| Q |
123 |
gatttcatatgccttagacttcattcaggta--ttctgttatacaaaca |
169 |
Q |
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| T |
8938370 |
ggcttcatatgcctcaaacttcttgcaagtatgttctgttatacaaaca |
8938418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 31796746 - 31796710
Alignment:
| Q |
45 |
tgatgacattgccaatacttattctcaaacaccattt |
81 |
Q |
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| T |
31796746 |
tgatgacattgctaatacttatgctcaaacaccattt |
31796710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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