View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504_1D_high_16 (Length: 354)
Name: NF1504_1D_high_16
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 53043698 - 53044034
Alignment:
| Q |
1 |
attatcatttttccagtgtggaaaaggggaaggcagacccttttgaaaccgattctttgacaaaggaattactggacaccaacaaatgctatattttaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53043698 |
attatcatttttccagtgtggaaaaggggaaggcagagccttttgaaaccgattctttgacaaaggaattactggacaccaacaaatgctatattttaga |
53043797 |
T |
|
| Q |
101 |
ttgtgggttagaggtgtttgtttggataggacgaaacacatctctcgatgaaaggaaaagcgcaagtggatctacagatgtaatttctcttctttacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53043798 |
ttgtgggttagaggtgtttgtttggataggacgaaacacatctctcgatgaaaggaaaagcgcaagtggatctacagatgtaatttctcttctttacttc |
53043897 |
T |
|
| Q |
201 |
tcggtattgttgagcatttgttaggagtgttaatgattattgggtttctgctggttaaaaacaggaactagtcagtagcaccaatcgaccaaaatcccag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53043898 |
tcggtattgttgagcatttgttaggagtgttaatgattattgggtttctgctggttaaaaacaggaactagtcagtagcaccaatcgaccaaaatcccag |
53043997 |
T |
|
| Q |
301 |
ataatctgcgtaatggaaggatttgaaacagtgatgt |
337 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53043998 |
ataatccgcgtaatggaaggatttgaaacagtgatgt |
53044034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 15963495 - 15963334
Alignment:
| Q |
9 |
ttttccagtgtggaaaaggggaaggcagacccttttgaaaccgattctttgacaaaggaattactggacaccaacaaatgctatattttagattgtgggt |
108 |
Q |
| |
|
|||| |||||| |||||||| ||||||| ||| |||| |||||||||||| || ||| || || ||||| || ||||| |||||| | |||||||||| |
|
|
| T |
15963495 |
ttttacagtgttgaaaagggacaggcagaacctgttgaggccgattctttgaaaagggagtttctagacacaaataaatgttatattctggattgtgggt |
15963396 |
T |
|
| Q |
109 |
tagaggtgtttgtttggataggacgaaacacatctctcgatgaaaggaaaagcgcaagtgga |
170 |
Q |
| |
|
| || | || || ||||| ||| ||||||| || || |||||||| ||||| ||||||||| |
|
|
| T |
15963395 |
tggaaatattcgtctggatgggaagaaacacctcccttgatgaaagaaaaagtgcaagtgga |
15963334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University