View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504_1D_high_19 (Length: 332)
Name: NF1504_1D_high_19
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 38351298 - 38351012
Alignment:
| Q |
16 |
gacatcaaaactacacacgtgagaagtacataattacttaactaggattaaacttaatatcatgctttgaccataatagttgcaaattgaactaaattag |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38351298 |
gacatcaaaactacacacgtgagatgtacataattacttaactatgattaaacttaatatcatgctttgaccataatagttgcaaagtgaactaaattag |
38351199 |
T |
|
| Q |
116 |
aaactaggagaatgaaagaagcaaagtcaagggtaatatcattgcaacgatcagtattctctccagaagtatcatcagctttgcaaacagtaccagtcac |
215 |
Q |
| |
|
||| |||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
38351198 |
gaacctggagaaggaaagaagcagagttaagggtaatatcattgcaacgatcagcattctctccagaaatatcatcagctttgcaagcagtaccagtcac |
38351099 |
T |
|
| Q |
216 |
ataaatcattgcaacattgattagaaatgcaacgaacagcgcgaaaccactctcaatgagaaagcatctacatgcatcctgcataat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || | ||||||||| ||||||| |
|
|
| T |
38351098 |
ataaatcattgcaacattgattagaaatgcaacgaacaacgtgaaaccactctcaatgagaaagtatatgcatgcatcccgcataat |
38351012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 4940741 - 4940456
Alignment:
| Q |
13 |
atggacatcaaaactacacacgtgagaagtacataattacttaactaggattaaact---taatatcatgctttgaccataatagttgcaaattgaacta |
109 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | |||| || |
|
|
| T |
4940741 |
atggacatcaaaactacacacgtgagatgtacataattacttaactaggattaaactaattaatatcatgctttgaccataatagttggagagtgaagta |
4940642 |
T |
|
| Q |
110 |
aattagaaactaggagaatgaaagaagcaaagtcaagggtaatatcattgcaacgatcagtattctctccagaagtatcatcagctttgcaaacagtacc |
209 |
Q |
| |
|
|||||| ||| |||||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
4940641 |
aattaggaacctggagaaggaaagaagcagagttaagagtaatatcattgcaacgatcagcattctcttcagaaatatcatcagctttgtaaacagtacc |
4940542 |
T |
|
| Q |
210 |
agtcacataaatcattgcaacattgattagaaatgcaacgaacagcgcgaaaccactctcaatgagaaagcatctacatgcatcctgcataat |
302 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || | |||||||||||| |||| |
|
|
| T |
4940541 |
agtcacaaaaatcattgcaacattgattagaaatgcaa-------cgcgaaaccactctcaattagaaagtatttgcatgcatcctgcgtaat |
4940456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 21311824 - 21311662
Alignment:
| Q |
19 |
atcaaaactacacacgtgagaagtacataattacttaactaggattaaacttaatatcatgctttgaccataatagttgcaaattgaactaaattagaaa |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
21311824 |
atcaaaactacacacgtgagatgtacataattacttaactaggattaaacttaatatcatgctttgaccataatagttgcaaactgaactaaattaggaa |
21311725 |
T |
|
| Q |
119 |
ctaggagaatgaaagaagcaaagtcaagggtaatatcattgcaacgatcagtattctctccag |
181 |
Q |
| |
|
|| |||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21311724 |
cttggagaaggaaagaagcagagttaagggtaatatcattgcaacgatcagcattctctccag |
21311662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 21311665 - 21311571
Alignment:
| Q |
208 |
ccagtcacataaatcattgcaacattgattagaaatgcaacgaacagcgcgaaaccactctcaatgagaaagcatctacatgcatcctgcataat |
302 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
21311665 |
ccagtcacagaaatcattgcaacattgatcagaaatgcaacgaacatcgtgaaaccactctcaatgagaaagtatctgcatgcgtcctgcataat |
21311571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 40125759 - 40126046
Alignment:
| Q |
16 |
gacatcaaaactacacacgtgagaagtacataattacttaactaggattaaacttaatatcatgctttgaccataatagttgcaaatt-gaactaaatta |
114 |
Q |
| |
|
|||||||||| |||||| |||||| ||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40125759 |
gacatcaaaattacacaagtgagatgtaaatacttgcttaattaggattaaacttaatatcatgctttgaccataatagttgcaaatgcgaactaaatta |
40125858 |
T |
|
| Q |
115 |
gaaactaggagaatgaaagaagcaaagtcaagggtaatatcattgcaacgatcagtattctctccagaagtatcatcagctttgcaaacagtaccagtca |
214 |
Q |
| |
|
| ||| |||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
40125859 |
ggaacctggagaaggaaagaagcggagttaagggtaatatcattgcaacgatcaacattctctccagaaatatcatcagccttgcaaacagtgccagtca |
40125958 |
T |
|
| Q |
215 |
cataaatcattgcaacattgattagaaatgcaacgaacagcgcgaaaccactctcaatgagaaagcatctacatgcatcctgcataat |
302 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
40125959 |
cagaaatcattgcaacattgattagaaatgcaacaaacaacgcgaaaccactctcaatgagaaagtatctgcatgcatcctgcataat |
40126046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University