View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1504_1D_high_22 (Length: 321)
Name: NF1504_1D_high_22
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 57 - 315
Target Start/End: Original strand, 43224045 - 43224306
Alignment:
| Q |
57 |
gggaaatggaaggcacatcaaagcaag---nnnnnnngaagaagaagcataatgaaaggtgcaagcaacaatatagagattagaaaacttacctaagact |
153 |
Q |
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| T |
43224045 |
gggaaatggaaggcacatcaaagcaagaaaaaaagaagaagaagaagcataatgaaaggtgcaagcaacaatatagagattagaaaacttacctaagact |
43224144 |
T |
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| Q |
154 |
tagactctgctagtatagagagttactatccttcgaaaatagtacaattctcaccaaattttctgtgttaatgtagggagtttttatagaattttcgtaa |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43224145 |
tagactctgctagtatagagagttactatccttcgaaaatagtacaattctcaccaaattttctgtgttaatgtagggagtttttatagaattttcttaa |
43224244 |
T |
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| Q |
254 |
tgcagtaaatataccgaatagaataaaagaaagaaaaataatttatcatgtagggtatatat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43224245 |
tgcagtaaatataccgaatagaataaaagaaagaaaaataatttatcatatagggtatatat |
43224306 |
T |
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