View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1504_1D_high_45 (Length: 222)
Name: NF1504_1D_high_45
Description: NF1504_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1504_1D_high_45 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 31837339 - 31837138
Alignment:
| Q |
11 |
taaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtatatcaggttcaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31837339 |
taaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtataccaggttcaag |
31837240 |
T |
|
| Q |
111 |
aatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattgccaac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31837239 |
aatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattgccaac |
31837140 |
T |
|
| Q |
211 |
ac |
212 |
Q |
| |
|
|| |
|
|
| T |
31837139 |
ac |
31837138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 31841372 - 31841182
Alignment:
| Q |
11 |
taaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaatgtatatcaggttcaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
31841372 |
taaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatcatcgaattaaagtcacccaat----accaggttcaag |
31841277 |
T |
|
| Q |
111 |
aatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31841276 |
aatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
31841182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 38040897 - 38040798
Alignment:
| Q |
106 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcgtaattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
38040897 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgcaacgtaaagttcttccattg |
38040798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 38040957 - 38040895
Alignment:
| Q |
11 |
taaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatca |
74 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||| |
|
|
| T |
38040957 |
taaacatgaactacaaccaaatgctagct-aattaaaacacagaccaacagagaaagtttatca |
38040895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University